PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G10720.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 365aa    MW: 38768.3 Da    PI: 5.0009
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G10720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-083163492154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  ORUFI08G10720.1 316 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 349
                      569*****************************87 PP
2ELK26.61.4e-09270291122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  ORUFI08G10720.1 270 ELKHELKQGYKEKLIDIREEIL 291
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-20106150IPR005540KNOX1
PfamPF037906.8E-18108149IPR005540KNOX1
SMARTSM012565.5E-27159215IPR005541KNOX2
PfamPF037911.4E-18167214IPR005541KNOX2
SMARTSM011880.004270291IPR005539ELK domain
PROSITE profilePS5121310.039270290IPR005539ELK domain
PROSITE profilePS5007111.742290353IPR001356Homeobox domain
SMARTSM003894.8E-11292357IPR001356Homeobox domain
SuperFamilySSF466892.69E-16292357IPR009057Homeodomain-like
CDDcd000866.45E-12293354No hitNo description
Gene3DG3DSA:1.10.10.605.5E-25297354IPR009057Homeodomain-like
PfamPF059201.0E-17310349IPR008422Homeobox KN domain
PROSITE patternPS000270328351IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAFHGHLPHE MTMQALGADD AAVAAAAAAG GVGAGGAPAW MRYNDGSFLH LQTTSDSSAS  60
PSGAAAAAAA AAAAAAAGVQ QWMGGGGGGE DAVAAAMGGG GEADAARCKA EILAHPLYEQ  120
LLSAHVACLR IATPVDQLPR IDAQLAQSQG VVAKYSALAA AAAGDDGREL DQFMTHYVLL  180
LCSFKEQLQQ HVRVHAMEAV MACWELEQNL QSLTGASPGE GTGATMSDGE DDQADSEANM  240
YDPSLDGADN MGFGLPTESE RSLMERVRQE LKHELKQGYK EKLIDIREEI LRKRRAGKLP  300
GDTTSTLKAW WQSHAKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHSNPSSSTS  360
MIAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A9e-13293357872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIsoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116450.0AK111645.1 Oryza sativa Japonica Group cDNA clone:J013132C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650701.20.0LOW QUALITY PROTEIN: homeobox protein knotted-1-like 13
SwissprotQ0J6N40.0KNOSD_ORYSJ; Homeobox protein knotted-1-like 13
TrEMBLA0A0E0QGZ00.0A0A0E0QGZ0_ORYRU; Uncharacterized protein
STRINGORUFI08G10720.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-157KNOTTED1-like homeobox gene 3