PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G10670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 790aa MW: 87113.6 Da PI: 8.1531 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 63 | 118 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk ORUFI08G10670.1 63 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 118 6677899************************************************8 PP | |||||||
2 | START | 100.2 | 3.7e-32 | 269 | 502 | 6 | 204 |
HHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 6 aaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ++++l+ k +++ p+W es+n++e+l k + + +++ + r++++v + +++lv++lld + +W e ++ +a t++ i ORUFI08G10670.1 269 ENESLLVKKKENGPLWLPHMdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKII 360 45666677789999999888899999********999553.3589999**************************.******99999******** PP CTT......EEEE....EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEE CS START 86 ssg......galq....lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliep 156 s+g g lq +m aelq++sp vp d++f+R++ q g g w +vdvS+d + ++ ss +R ++llpSg++ie+ ORUFI08G10670.1 361 STGpsnlhdGLLQlknlQMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTILPGESktaqssvqtSSTAARrmeVRLLPSGCVIEE 454 *********655522226899***********************************97666655543222333222233445999********* PP ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 ++ng+skvtw+ h+ +++r ++ l++sl++s a ga +wva lqr+ ORUFI08G10670.1 455 MENGYSKVTWMVHAAYDERAVPVLYHSLLHSAKALGACRWVASLQRHS 502 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-15 | 49 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.77E-18 | 51 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.742 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-17 | 61 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.45E-18 | 62 | 118 | No hit | No description |
Pfam | PF00046 | 4.1E-17 | 63 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-4 | 102 | 144 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.83E-4 | 110 | 147 | No hit | No description |
PROSITE profile | PS50848 | 24.334 | 245 | 507 | IPR002913 | START domain |
CDD | cd08875 | 6.82E-91 | 249 | 503 | No hit | No description |
SuperFamily | SSF55961 | 1.11E-17 | 249 | 502 | No hit | No description |
SMART | SM00234 | 3.3E-9 | 254 | 504 | IPR002913 | START domain |
Pfam | PF01852 | 4.3E-25 | 272 | 502 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MNGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK 60 KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK 120 NNEERKLLQK ENEELKKENA ELRNRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS 180 NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA 240 NANDGYTEKN VLLDLANRAM EEFFSLMKEN ESLLVKKKEN GPLWLPHMDI LGVESLNYQE 300 YLAKSRTIGQ KPVDFKVVVT RDTAIVNGSC VDLVKSLLDA NRWRELFPGI VASANTTKII 360 STGPSNLHDG LLQLKNLQMR AELQVMSPEV PVCDVTFLRQ SVQFGSGLWC VVDVSIDTIL 420 PGESKTAQSS VQTSSTAARR MEVRLLPSGC VIEEMENGYS KVTWMVHAAY DERAVPVLYH 480 SLLHSAKALG ACRWVASLQR HSQFLSGLHK YIFCPDSTMT EVVMRRKVLY LVKQMTSSFT 540 GLFASMSKAT LQDGDDTHFA HQIVGGATGE PAGLLLSATT TIWLPGVNPR HVYDHLRDEQ 600 CHGEWRCLLG EQLHQGNALP YGAPLNGETV PEFYRMVNGL HEGHAISLIS PREMGGNISN 660 TLLLQEARTD LSGSLIVYAR TDVNTVHSIM NSGLNPATVF LVSSGCAILP DCLESFPLHP 720 AATADQAGTS SAAIASRSET GGSFVTVTYQ MFFSSQGGAA PASSSIHQGR DALKKATDIF 780 KVVLDTLTVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100441 | 0.0 | AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650915.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X1 | ||||
Refseq | XP_015650916.1 | 0.0 | homeobox-leucine zipper protein ROC6-like isoform X1 | ||||
TrEMBL | A0A0E0QGY3 | 0.0 | A0A0E0QGY3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G10670.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16978 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 5e-89 | protodermal factor 2 |