PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G06800.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 423aa    MW: 47200.8 Da    PI: 5.6074
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G06800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC151.31.9e-472523551101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   +e++t+fk  +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifdf
  ORUFI08G06800.1 252 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDF 345
                      89******9777799******************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdi+  d++
  ORUFI08G06800.1 346 LVDIITDDKM 355
                      *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495902.35E-122292IPR007117Expansin, cellulose-binding-like domain
Gene3DG3DSA:2.60.40.7606.6E-122272IPR007117Expansin, cellulose-binding-like domain
PfamPF013571.6E-92371IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS508439.5272871IPR007117Expansin, cellulose-binding-like domain
SuperFamilySSF471137.54E-29232346IPR009072Histone-fold
PfamPF008081.7E-18274336IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.0E-32275350IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAKPGLNDKL RHSGIIDIHF RREGSNPVYF AVLVKYEDLD GDVVQVDLME SKSAYGGAIG  60
VWTPMRESWG SASAATPARP FVTNNVIPAN WSRIAPSLPP SPLPRRPRSL RARPLPRLSR  120
LGLFLCPRLP DATLAALTAA PSISAVDISF VWGFGGVLAM EMILQQLHRS TSLEMDPHSH  180
KKAHEGLIGD NPDAYAVTTY QPVLMVEPSA AAAFPPAPQV APAYPVNPMQ LPEHQQHAIQ  240
QVQQLQQQQK EQLQAFWADQ MAEVEQMTEF KLPNLPLARI KKIMKADEDV KMIAGEAPAL  300
FAKACEMFIL DMTLRSWQHT EEGRRRTLQR SDVEAVIKKT DIFDFLVDII TDDKMKDDGM  360
GSQAASMVSP YTSGGMGFSF DLYPNQHHLA YMWPPQEQQE QWPPQEQQEQ KQKQDSDGGG  420
QDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-40260350393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330RRTLQRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038750.0AP003875.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1119_C05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649457.10.0nuclear transcription factor Y subunit C-4-like
SwissprotQ655V52e-54NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0E0QFM00.0A0A0E0QFM0_ORYRU; Uncharacterized protein
STRINGORUFI08G06800.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169771112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-49nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]