PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G05670.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 739aa    MW: 79478.5 Da    PI: 5.1622
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G05670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.32e-11107147141
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLte 41 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ 
  ORUFI08G05670.1 107 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEP 147
                      688999*********************************86 PP
2START208.13.5e-652865061206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++elv++a+++ep+W++ss      ++++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a+t
  ORUFI08G05670.1 286 ELAVAAMDELVQMAQLDEPLWSSSSepaaALLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRAST 378
                      57899********************99999999********99888999*****************************.88888888888**** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      +ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwve
  ORUFI08G05670.1 379 HEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VQKCRRRPSGCLIQEMPNGYSKVTWVE 468
                      *************************************************************99....79999********************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  ORUFI08G05670.1 469 HVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 506
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1094149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-1495149IPR009057Homeodomain-like
SMARTSM003894.7E-4105159IPR001356Homeobox domain
CDDcd000862.15E-10106149No hitNo description
PfamPF000464.8E-9107147IPR001356Homeobox domain
PROSITE profilePS5084839.771277509IPR002913START domain
SuperFamilySSF559617.97E-35278508No hitNo description
CDDcd088751.59E-122281505No hitNo description
SMARTSM002349.9E-61286506IPR002913START domain
PfamPF018527.8E-54287506IPR002913START domain
Gene3DG3DSA:3.30.530.206.7E-7352505IPR023393START-like domain
SuperFamilySSF559612.47E-16528729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MTPARRMPPV IGRNGVAYES PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTAAADS  60
GDNMLHGRAD AGGLVDEFES KSCSENVDGA GDGLSGDDQD PNQRPRKKRY HRHTQHQIQE  120
MEAFFKECPH PDDKQRKELS RELGLEPLQN QHERHENAQL RAENDKLRAE NMRYKEALSS  180
ASCPNCGGPA ALGEMSFDEH HLRVENARLR DEIDRISGIA AKHVGKPPIV SFPVLSSPLA  240
VAAARSPLDL AGAYGVVTPG LDMFGGAGDL LRGVHPLDAD KPMIVELAVA AMDELVQMAQ  300
LDEPLWSSSS EPAAALLDEE EYARMFPRGL GPKQYGLKSE ASRHGAVVIM THSNLVEILM  360
DVNQFATVFS SIVSRASTHE VLSTGVAGNY NGALQVMSME FQVPSPLVPT RESYFVRYCK  420
NNSDGTWAVV DVSLDSLRPS PVQKCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDSSVHNI  480
YKPLVNSGLA FGAKRWVGTL DRQCERLASA MASNIPNGDL GVITSVEGRK SMLKLAERMV  540
ASFCGGVTAS VAHQWTTLSG SGAEDVRVMT RKSVDDPGRP PGIVLNAATS FWLPVPPAAV  600
FDFLRDETSR SESANSNQSN MLILQESCTD ASGSYVVYAP VDIVAMNVVL NGGDPDYVAL  660
LPSGFAILPD GPSGNAQAAV GENGSGSGGG SLLTVAFQIL VDSVPTAKLS LGSVATVNSL  720
IACTVERIKA AVCRDSNPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0779930.0AB077993.1 Oryza sativa mRNA for Roc1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0E0QF860.0A0A0E0QF86_ORYRU; Uncharacterized protein
STRINGORUFI08G05670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]