PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI08G05340.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 419aa MW: 42579.6 Da PI: 6.5503

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI08G05340.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00023	302	341	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ ++ L++l+ + +K + a++L +++eYIk L ORUFI08G05340.2 302 KVRKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 341 556667777777888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-12	291	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.351	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-5	295	345	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.2E-9	297	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-4	298	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MADHQEMIHA AAAPAMYGGG GGAAAGGATT TTGSHGGGGG DWWSAAVSSC SAPAPETMQG 60 FGGWSAAVVA VDGGGNTSRS AAGNTASSES PGSLATGSSI TFQEPAGGVA DPAAIAVHAQ 120 TVAGGGGGGW NQQPFLDGSG FHGYMSSSRN DHHTNHHHHQ INTPSLMSNS SSNNGVMLQE 180 HQHDQNYQFL SNLGFELLSS PTSPYGGGGG FRSSLLRSLT EPAAAAKPND SPGFQQYHHH 240 QPAMNLQPPA AAAGREPLQF TNSTAAPFWN PSSGFTVAAE GTALGGAGAS PAQPTPASLA 300 AKVRKEKLGD RVTALQQLVS PFGKTDTASV LHETIEYIKF LHDQVGALSA PYLKNRQQVP 360 HLKNSTGVDN DGGGGGEATA ASKRDLTGRG LCLVPISSTF AVASETPVDF WTPFGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MADHQEMIHA AAAPAMYGGG GGAAAGGATT TTGSHGGGGG DWWSAAVSSC SAPAPETMQG  60
FGGWSAAVVA VDGGGNTSRS AAGNTASSES PGSLATGSSI TFQEPAGGVA DPAAIAVHAQ  120
TVAGGGGGGW NQQPFLDGSG FHGYMSSSRN DHHTNHHHHQ INTPSLMSNS SSNNGVMLQE  180
HQHDQNYQFL SNLGFELLSS PTSPYGGGGG FRSSLLRSLT EPAAAAKPND SPGFQQYHHH  240
QPAMNLQPPA AAAGREPLQF TNSTAAPFWN PSSGFTVAAE GTALGGAGAS PAQPTPASLA  300
AKVRKEKLGD RVTALQQLVS PFGKTDTASV LHETIEYIKF LHDQVGALSA PYLKNRQQVP  360
HLKNSTGVDN DGGGGGEATA ASKRDLTGRG LCLVPISSTF AVASETPVDF WTPFGAAFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648821.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	A0A0E0QF50	0.0	A0A0E0QF50_ORYRU; Uncharacterized protein
STRING	ONIVA08G04680.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-36	bHLH family protein