PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G04330.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 394aa    MW: 44250.6 Da    PI: 5.9993
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G04330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26057.83.1e-1823431823100
           DUF260  23 pa..eqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                      pa  +qpk+f++++ +FG++++l + +a ++  r      + m+++vy A+ar++dP+ Ga+g ilklqqql++lkae a+++++
  ORUFI08G04330.1 234 PAelRQPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRILKLQQQLDRLKAERARQHHP 318
                      5533579********************976555666666899**************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.7E-11238315IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEVFQDVESV RLRSRVDGSV GRYLLASEDD QRRGRGRRRR PPPGPRAPPR RLRPLSRCPR  60
RHQPLLGAPF CFWPAAGQRD FDREEVRSTP SCGVPTTARY LRVNERWLPC LAGVAAFNDG  120
DLNIPMQWEV LPVPTTLFRR DIPAMGHRLE YLPRSWETLH VVLVKSNTAV ETADRADHTS  180
LASPRHATPP KFHRVLDPLA DEELINGGAA AVADDDDDPT GVRRVRTPRG KQLPAELRQP  240
KRFWYARLMF GMERILGFSE AEKQGIRPNG STVISMAAVV YLADARVEDP ILGAYGRILK  300
LQQQLDRLKA ERARQHHPAT SSPAPADDVA LQPEPFHQPP AQPSTPPALA IPDEEEEEDN  360
DDDEDEDEEE GQEDGEGHAP ADDDVPCAKR RKHN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056050.0AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01.
GenBankAP0058470.0AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0QER00.0A0A0E0QER0_ORYRU; Uncharacterized protein
STRINGORUFI08G04330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16910911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-06LOB domain-containing protein 1