PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G04050.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 304aa    MW: 31929.9 Da    PI: 7.2515
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G04050.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.82.8e-19156192238
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkv 38 
                      pr+rWt++LH+rFv+ave LGG+++AtPk++lelm++
  ORUFI08G04050.2 156 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDM 192
                      9**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-6153192IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-15154192IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-13156197IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MELFPSQPDL SLQIGLPTGA AAAAHGHGLN ARFFAAAAGA GGHNPAMASS PPSSLQLPLP  60
MPLPMAPAGA GGLQFYPDAA AAMLRPIRGV PLYHHHQQQH AAAAPFVGAA PLPHHPSSGG  120
ACYCEPCHVA GAWRRGGCGG GGARGVLPAK RAPRAPRMRW TSTLHARFVH AVELLGGHDR  180
ATPKSVLELM DMYRTVKNTE RPAASSDQAD GFENGSAGEI CDENSLDLHG GCRPEAMSAA  240
ARHGREDWSG FHESNTGTMQ TLKDMQSKSL EIISDMNSCV SETTSSTSEL NLEFTLGRPQ  300
NRPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046350.0AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0055040.0AP005504.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577B11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648944.11e-161probable transcription factor KAN2 isoform X2
TrEMBLA0A0E0QEM70.0A0A0E0QEM7_ORYRU; Uncharacterized protein
STRINGORUFI08G04050.11e-163(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-25G2-like family protein