PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ORUFI08G04050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 327aa MW: 34211.3 Da PI: 7.2911 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60.6 | 3.1e-19 | 156 | 192 | 2 | 38 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkv 38 pr+rWt++LH+rFv+ave LGG+++AtPk++lelm++ ORUFI08G04050.1 156 PRMRWTSTLHARFVHAVELLGGHDRATPKSVLELMDM 192 9**********************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-6 | 153 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-15 | 154 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-13 | 156 | 197 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MELFPSQPDL SLQIGLPTGA AAAAHGHGLN ARFFAAAAGA GGHNPAMASS PPSSLQLPLP 60 MPLPMAPAGA GGLQFYPDAA AAMLRPIRGV PLYHHHQQQH AAAAPFVGAA PLPHHPSSGG 120 ACYCEPCHVA GAWRRGGCGG GGARGVLPAK RAPRAPRMRW TSTLHARFVH AVELLGGHDR 180 ATPKSVLELM DMYRTVKNTE RPAASSDQAD GFENGSAGEI CDENSLDLHG GCRPEAMSAA 240 ARHGRLAACN DHGSSTGAHG ALWNSSSRED WSGFHESNTG TMQTLKDMQS KSLEIISDMN 300 SCVSETTSST SELNLEFTLG RPQNRPN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004635 | 0.0 | AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01. | |||
GenBank | AP005504 | 0.0 | AP005504.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0577B11. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648943.1 | 1e-178 | probable transcription factor RL9 isoform X1 | ||||
TrEMBL | A0A0E0QEM6 | 0.0 | A0A0E0QEM6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G04050.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4721 | 36 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32240.1 | 6e-25 | G2-like family protein |