PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G04020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 336aa MW: 34812.5 Da PI: 8.6013 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.2 | 3.9e-10 | 57 | 82 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ ORUFI08G04020.1 57 FKTKLCCKFRA-GTCPYVTNCNFAHGM 82 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.1 | 4.8e-06 | 139 | 164 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ ORUFI08G04020.1 139 YKGRHCKKFYTDEGCPYGDACTFLHD 164 77888********************7 PP | |||||||
3 | zf-CCCH | 43.5 | 5.2e-14 | 215 | 240 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg ORUFI08G04020.1 215 WKTRICNKWEMTGYCPFGSKCHFAHG 240 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.4E-8 | 54 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 54 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 56 | 83 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-7 | 57 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-8 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-7 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.43 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-17 | 209 | 244 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-10 | 210 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 214 | 241 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 214 | 242 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-11 | 215 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGHRGPYTSQ WNADGGGGGS SRAGSEQPPP GKKSRGGGGG EGGGNTSKSR AIGKMFFKTK 60 LCCKFRAGTC PYVTNCNFAH GMEELRKPPP NWQEIVAAHE EATEAREEHQ IPIMTSSGPT 120 AGGDAGCGGG GGGGSGRAYK GRHCKKFYTD EGCPYGDACT FLHDEQSKAR ESVAISLSPS 180 VGGGGGGGSY NSAAAAAASA SAAAGNGPMQ KPSNWKTRIC NKWEMTGYCP FGSKCHFAHG 240 AAELHKYGGG LVDIDSRDAA ATPDSKQAVV SAKAPAETAA ASTTVLPHAD VYHLGVQAQR 300 STIAGQRSGQ VQRPIQKWKG PDKISRIYGD WIDETE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004635 | 0.0 | AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01. | |||
GenBank | AP004698 | 0.0 | AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648128.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Refseq | XP_015648129.1 | 0.0 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 0.0 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A0E0QEM2 | 0.0 | A0A0E0QEM2_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G04020.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-88 | C3H family protein |