PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G03990.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 190aa    MW: 19665.9 Da    PI: 7.8316
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G03990.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.64.9e-147498125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL+YP+GA+sV+Ca+C tV
  ORUFI08G03990.2 74 CSGCRNLLMYPAGATSVCCAVCSTV 98
                     ***********************99 PP

2zf-LSD146.27.2e-15113137125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      CggC+tlL+Y rGA+sV+C++C+tV
  ORUFI08G03990.2 113 CGGCHTLLMYIRGATSVQCSCCHTV 137
                      ************************9 PP

3zf-LSD141.32.5e-13151175125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  ORUFI08G03990.2 151 CGNCRMLLMYQYGARSVKCAVCNFV 175
                      ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.6E-1371101IPR005735Zinc finger, LSD1-type
PfamPF069432.7E-117498IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.51E-574172IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.3E-14110139IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-12113137IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.1E-12148178IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-12151175IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTSVLLMHLS AGFLSCRERK GDFSCLTAAR ICEASTSDAV VQAAGTAMPV PLAPYPTPPV  60
PFTPPNGAQS QLVCSGCRNL LMYPAGATSV CCAVCSTVTA VPAPGTEMAQ LVCGGCHTLL  120
MYIRGATSVQ CSCCHTVNLA MEANQVAHVN CGNCRMLLMY QYGARSVKCA VCNFVTSVGA  180
SPGTDQKPSS
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117590.0AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648106.11e-126protein LSD1 isoform X3
RefseqXP_015648107.11e-126protein LSD1 isoform X3
SwissprotQ0J7V91e-133LSD1_ORYSJ; Protein LSD1
TrEMBLA0A0E0QEL81e-134A0A0E0QEL8_ORYRU; Uncharacterized protein
STRINGORUFI08G03990.21e-135(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-61lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]