PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G02650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 27055.7 Da PI: 5.8206 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6.2e-10 | 82 | 130 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rE+ RRd++N++f eL + l + + K +Ka+iL A++ + +L ORUFI08G02650.1 82 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 130 67889**********************9...99*************988777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.27E-12 | 77 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.36 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.68E-8 | 80 | 133 | No hit | No description |
Pfam | PF00010 | 1.9E-7 | 83 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-12 | 83 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-8 | 85 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00232 | 146 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSGTPADGGG GGGGGSGDDW FLDCGILEDL PAAACGAFPW DASPSCSNPS VEVSSYVNTT 60 SYVLKEPGSN KRVRSGSCGR PTSKASREKI RRDKMNDRFL ELGTTLEPGK PVKSDKAAIL 120 SDATRMVIQL RAEAKQLKDT NESLEDKIKE LKAEKDELRD EKQKLKVEKE TLEQQVKILT 180 ATPAYMPHPT LMPAPYPQAP LAPFHHAQGQ AAGQKLMMPF VGYPGYPMWQ FMPPSEVDTS 240 KDSEACPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102951 | 0.0 | AK102951.1 Oryza sativa Japonica Group cDNA clone:J033115D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649810.1 | 1e-175 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-69 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0E0AQM2 | 0.0 | A0A0E0AQM2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QE50 | 0.0 | A0A0E0QE50_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM08G02420.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI08G02650.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-72 | bHLH family protein |