PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI08G01040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 404aa MW: 43957.4 Da PI: 9.6115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 5.8e-49 | 31 | 156 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+++ ORUFI08G01040.1 31 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVKVE 123 79***************************.89***************888889***************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy g+apkg +++W+m+eyrl ORUFI08G01040.1 124 GDRPIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 156 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-56 | 30 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.03 | 30 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 32 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MRGSDHHQDV VAAPRGGGGG GDDGQAHDMV MPGFRFHPTE EELIEFYLRR KVEGKRFNIE 60 LIAFVDLYRY DPWDLPALAS IGDKEWFFYV PRDRKYRNGD RPNRVTPSGY WKATGADRMV 120 KVEGDRPIGL KKTLVFYVGK APKGLRSSWI MNEYRLPHGD ADRYQKEISL CRVYKRPGIE 180 DNFHLTGTTT KSSGSKAAAA MGKKHAAANR TSSTAAAAAP RLAPMFDGGG GGGHHSSALM 240 GKATYNASHT AAEGTNAIAM SLSAAAALHP PAPAMFRSTA SVASLSSTTS TEEDGTSLFH 300 LKAGATTTNT TTMHHHHHHQ QLPASTHALL NTNSSAMATI PIDELSRAIG SYSNIHHQPN 360 STTTHQSTAL PPSQQSPLLP FASMEKIWDW NPLLESPKVC TNFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 32 | 176 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-54 | 32 | 176 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 32 | 176 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071052 | 0.0 | AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence. | |||
GenBank | AK072275 | 0.0 | AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659059.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A0E0QDK3 | 0.0 | A0A0E0QDK3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI08G01040.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 5e-97 | NAC domain containing protein 35 |