PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G27670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 346aa MW: 38340.6 Da PI: 7.2252 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108 | 4.9e-34 | 52 | 106 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQkYRl ORUFI07G27670.1 52 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 106 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.694 | 49 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-32 | 50 | 107 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-17 | 51 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 52 | 107 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-10 | 54 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-25 | 155 | 201 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MTGTEQMMYH QQQVQSDSQH LSSRPGLPPE KQFLLQGGAD SSSGLVLSTD AKPRLKWTSE 60 LHERFVEAVN QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQKYRLSKNL QSQANASRAQ 120 GVLGCSTTEI DKPCEGNGSP ASHLDLETQT NSSSMHINEA LQMQIEVQRR LHEQLEVQRH 180 LQLRIEAQGK YLQSVLEKAQ EALGTIAVAE TAATANASSS KRLQNEHTQL HHHQQQQQVG 240 DGSVDSCLTA CDCEGSHHSR SHGHRGEQDI LSIGLPPFEP AAARSGKEHH YLLFPNEPSR 300 RRSCSDERRR EMSTLQASEL DLSINGRSSS HSHRRENIDL NGAGWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-19 | 52 | 108 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067645 | 0.0 | AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646569.1 | 0.0 | myb-related protein 1 isoform X1 | ||||
Swissprot | Q9FK47 | 2e-78 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | A0A0E0QCX0 | 0.0 | A0A0E0QCX0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G27670.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 4e-77 | G2-like family protein |
Publications ? help Back to Top | |||
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