PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI07G27660.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 476aa MW: 50802.3 Da PI: 5.4725

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI07G27660.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.9e-39	104	163	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s ORUFI07G27660.1 104 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNLPVGAGRRKSKSS 163 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	101	161	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	106	162	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.528	108	162	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	110	146	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MDDLAAASPP HPPPPPPESH VPPPPQTPEK DSCEDTGDMR ISEEKPCTDQ ELDADQMNSS 60 SFNSSSECEN QTPSNDEMTG SESKSEAAQT EGGGSSEEKV LKKPDKILPC PRCNSMDTKF 120 CYYNNYNINQ PRHFCKSCQR YWTAGGSMRN LPVGAGRRKS KSSTANYRSI LITGSNLAAP 180 AGDAPLYQLS IKGDQTATAV KFAPDSPLCN SMASVLKIGE QSKNAKPTST ALPRNGETQT 240 CPASGTTSDS PRNEPVNGAV SGHQNGIVGH SGVPPMHPIP CFPGPPFVYP WSPAWNGIPA 300 MAPPVCTAPA EPANSSDNGS TASVQWSMPP VMPVPGYFPV IPSSVWPFIS PWPNGAWSSP 360 WIQPNCSVSA SSPTSTSTCS DNGSPVLGKH SRDSKPQGDD KAEKNLWIPK TLRIDDPDEA 420 AKSSIWTTLG IEPGDRSMFR SFQSKPESRE QISGAARVLQ ANPAALSRSQ SFQETT

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MDDLAAASPP HPPPPPPESH VPPPPQTPEK DSCEDTGDMR ISEEKPCTDQ ELDADQMNSS  60
SFNSSSECEN QTPSNDEMTG SESKSEAAQT EGGGSSEEKV LKKPDKILPC PRCNSMDTKF  120
CYYNNYNINQ PRHFCKSCQR YWTAGGSMRN LPVGAGRRKS KSSTANYRSI LITGSNLAAP  180
AGDAPLYQLS IKGDQTATAV KFAPDSPLCN SMASVLKIGE QSKNAKPTST ALPRNGETQT  240
CPASGTTSDS PRNEPVNGAV SGHQNGIVGH SGVPPMHPIP CFPGPPFVYP WSPAWNGIPA  300
MAPPVCTAPA EPANSSDNGS TASVQWSMPP VMPVPGYFPV IPSSVWPFIS PWPNGAWSSP  360
WIQPNCSVSA SSPTSTSTCS DNGSPVLGKH SRDSKPQGDD KAEKNLWIPK TLRIDDPDEA  420
AKSSIWTTLG IEPGDRSMFR SFQSKPESRE QISGAARVLQ ANPAALSRSQ SFQETT

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK104095	0.0	AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
GenBank	AY224430	0.0	AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647890.1	0.0	cyclic dof factor 2
TrEMBL	A0A0E0QCW9	0.0	A0A0E0QCW9_ORYRU; Uncharacterized protein
STRING	ORUFI07G27660.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-81	cycling DOF factor 2