PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G27410.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 915aa    MW: 100533 Da    PI: 6.7716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G27410.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19329428198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  ORUFI07G27410.2 329 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGG 420
                      99**************************555567778***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  ORUFI07G27410.2 421 KLVMGFRK 428
                      77877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-31321438IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21326429IPR015300DNA-binding pseudobarrel domain
CDDcd100174.01E-24327428No hitNo description
PROSITE profilePS5086311.547329430IPR003340B3 DNA binding domain
PfamPF023624.4E-16329428IPR003340B3 DNA binding domain
SMARTSM010194.0E-22329429IPR003340B3 DNA binding domain
PROSITE profilePS5105014.706589639IPR011124Zinc finger, CW-type
PfamPF074961.5E-11594636IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV  60
FCDIFHQKES GWRDCSFCGK VPSPVVPKLF SSQNNQRLFG KSDDLLSGRP LETSSLMVDA  120
RNDDLTIIAK NNLPFMVKNV EAGQSSNILR QKELENGARQ IKWELPTLSI GDMGRIPFLT  180
RSQSALESRR DENKDPTTES TTSESLSEAC LNMSLGIASN GNKLEATSTV ERPMLSPTTG  240
FPEGRELTTA LSPFQHAQRA RHFLTRPPRV GEGAVFDPTK DMLPHLRVAR PPAEGRGRNQ  300
LLPRYWPRIT DQELQQISGD SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ  360
PEGRPLTIQD AKGKEWHFQF RFWPNNNSRM YVLEGVTPCI QSLQLQAGDT VTFSRIEPGG  420
KLVMGFRKAT NTVSLPDSQI SAIANGSILG DTLFSSTNEN LAIVSGYSGF LQSIKGAADL  480
HTSSIYDHHV NSADGDVSWL KTDKFGSRPD EGSLQFLKRG RNIGSKSRRL SMDAEEAWEL  540
KLYWDEVQEL LRPAPTAKPT VVMIEDYEIE EYDEPPVFAK RSIFTIRSTG EQDQWIQCDD  600
CSKWRRLPLN VIVASKWTCA DNTIDSKSCS CSAPEELTPK ELHIVLQQYE DMRRRRNSFG  660
FKQNIPEMDA VSLDAFATAA VYGDVGNQGS PSVATTTKHP RHRPGCTCIV CIQPPSGKGP  720
KHNPACTCNV CMTVRRRFKT LMMRKKQRQS EREEAEASKK IAWMNRDEPE GSSLSRSPQT  780
VDTTRDGDVT MFDKVDINKG HIDLNFHPTA VRDEERHGGQ PRVSMVSLLE VANRPLENYM  840
KQNGLTSLAG EQGSSSTCTG AATVPQPALV ESEERTSNND GGRVATAEQP ESMAVDEAGD  900
NQPDKAAGDS AAALA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-673074312126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1734745RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646777.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0E0QCT30.0A0A0E0QCT3_ORYRU; Uncharacterized protein
STRINGORUFI07G27410.10.0(Oryza rufipogon)
STRINGOS07T0679700-010.0(Oryza sativa)
STRINGOBART07G26400.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-180HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]