PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G24160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29367.9 Da PI: 7.3047 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.1 | 2e-05 | 35 | 83 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r ++erE+ Rd+ N+ f+eL ll ++ + + Ka +L ++++ +k+ ORUFI07G24160.1 35 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVLSETTRILKD 83 68899**********************997....4556666677666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-8 | 31 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-11 | 31 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.47E-4 | 32 | 89 | No hit | No description |
PROSITE profile | PS50888 | 11.23 | 34 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVPRDRVNAA AGGGVEGRLV QSGIVNKKCD KKAPKRIHKS EREKLKRDKQ NDLFNELGNL 60 LEPDRQNNGK ACVLSETTRI LKDLLSQVES LRKENSSLKN ESHYVALERN ELHDDNSMLR 120 TEILELQNEL RTRMEGNPVW SHVNTRPALR VPYPTTGVFP VQHLPHLPVT TTGAFPQQQP 180 VIIEQHYAAT PRELQLFPES ATSEDSEPSQ EHGISDHVTR PQPRYPTPTA TLPVNLFPVL 240 PGRQDQQCSS GTSDEDRIGR S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070963 | 0.0 | AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence. | |||
GenBank | HQ858856 | 0.0 | HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645391.1 | 1e-180 | transcription factor BHLH062-like | ||||
Refseq | XP_015645393.1 | 1e-180 | transcription factor BHLH062-like | ||||
Swissprot | Q69V10 | 0.0 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A0E0QBK6 | 0.0 | A0A0E0QBK6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G24160.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 1e-36 | bHLH family protein |
Publications ? help Back to Top | |||
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