PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G23500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 1108aa MW: 125115 Da PI: 7.0007 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.1 | 8.3e-15 | 21 | 73 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A+++gLt +qV++WF+ rR ke++ ORUFI07G23500.1 21 TKKSPLQIQMLERFYSEVQYPQSEDIAEYATSVGLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-14 | 13 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.013 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-14 | 16 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.21E-13 | 16 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.9E-12 | 21 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-8 | 21 | 64 | No hit | No description |
Pfam | PF15612 | 1.9E-5 | 601 | 632 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.9E-11 | 724 | 795 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1108 aa Download sequence Send to blast |
MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA TSVGLTYNQV 60 RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSRS SSFSRSTMYR TVNLQPEDDR 120 YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDGPPLGS EFDPLPHSAP GHLRDTTDDH 180 FYQNQRVIKK RKIVEPTTQR SSLPCGDNGP VRKHGAGKGL MTVWHAMYSH SSKIQDGSNF 240 IDETGCLRSL RPLDDCGRIE DCDDGKLIQV PSSRVTDPKK HPPMECHLSV DESQSPVLQA 300 NQVTLVDDEE LELRELQAGP NPLRCSAHLS SSGRHGCPLC KDLLSRFPPS SVKMKQPFST 360 RPWGSSPEMV KKLFQVVRFI YNRFGYMDVH PFTLDELAQA FHDKVREQEF DMNFWIKSLN 420 SLTWVEILRQ VLVASGFGLK HHMLNRDFFN KEKNQMVKYG LRPRTLKGEL FALLSKKGSG 480 GLKVSELAKS PEIVDLSISS TEIEQLIYST LSSDITLFEK IAPSAYRLRV DPRIKGKEDS 540 GSDTEDSGSV DDHSDASSGA DESDGSHEMS FSEHEHRILR RKWKNGHENV NRCSEIDESY 600 SGERWLLGLM EGEYSDLSID EKLDCLVALM DVVSGADSAP RLEEPSRVVP SIPRAQPHVS 660 GGKIKKSTRN ICQSSDECFN ASGSMYGLDS SMHEQSRSLR SRDYVAYSGR NDTSTGVAHQ 720 PQVVLLGSDR RYNNYWLFLG PCRADDPGHR RVYFESSEDG HWEVIDSPQE LLSLLASLDS 780 RGTREAYLLA SMKKRQTCLF EAMKKHYENR DAVQPAMPSD TSHSETSSGD GASPKLSSGD 840 GASPTSDIDN ASVPTNPAEN MINASSAIAI EVGRRGDEKI LKWERSQTFD KWIWTSFYSC 900 LTAVKCGKKS FKESLVRCES CHDLYWRDEK HCRICHSTFE VSFDLEERYA IHVATCRDPE 960 DVYDVPNHKV LPSQLQALKA AIHAIEAHMP EAAFAGLWMK SSHKLWVKRL RRTSSLAELL 1020 QVLVDFVGAM DEDWLYKSSS SVSFCSYLDD IVIYFQTMPQ TTSAVALWVV KLDALITPYL 1080 ERADSDRALG EESVQTRTRA CGEIARNR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | RRRKERRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646956.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A0E0QBC8 | 0.0 | A0A0E0QBC8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G23500.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4556 | 33 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 1e-142 | Homeodomain-like transcriptional regulator |