PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G23290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 37162.6 Da PI: 4.4666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 111 | 161 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdp++ r++lg+fgtaeeAa a++ +++++g ORUFI07G23290.1 111 TRYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFGTAEEAAMAYDVEARRIRG 161 68********.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-12 | 111 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.30E-30 | 111 | 170 | No hit | No description |
SMART | SM00380 | 3.9E-35 | 112 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 112 | 170 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-31 | 112 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.749 | 112 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 113 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 135 | 151 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MCGGSILGDL HLPVRRTVNA GDLWGDAGKG RDGGDGLKKR KGSSWDFDVD CDDDDDDDDF 60 EADFEEFEDD YGDDDDVGFG HDDQESDMNG LKLAGFSTTK LGLGGSRKRK TRYRGIRQRP 120 WGKWAAEIRD PRKGVRVWLG TFGTAEEAAM AYDVEARRIR GKKAKVNFPD AAAAAPKRPR 180 RSSAKHSPQQ QKARSSSSSP ASLNASDAVS KSNNNRVSSA GSSTDATAAA IAIDDGVKLE 240 LLSETDPSPP MAAAAWLDAF ELNDLDGSRC KDNAFDHQIH KVEAAVADEF AFYDDPSYMQ 300 LGYQLDQGNS YENIDALFGG EAVNIGGLWS FDDMPMEFRA Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 113 | 169 | 6 | 63 | ATERF1 |
3gcc_A | 2e-20 | 113 | 169 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 110 | SRKRKT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061047 | 0.0 | AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence. | |||
GenBank | AK067060 | 0.0 | AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence. | |||
GenBank | AK109360 | 0.0 | AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647923.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0E0QBA1 | 0.0 | A0A0E0QBA1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G23290.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14560 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-33 | ethylene-responsive element binding protein |