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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ORUFI07G22480.2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 268aa MW: 30397.2 Da PI: 9.0179 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 98.4 | 2.9e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+nrqvtfskRrng+lKKA+E+SvLCda+va+i+fs++gklye+ss
ORUFI07G22480.2 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSS 59
8***********************************************96 PP
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| 2 | K-box | 93.9 | 2.7e-31 | 84 | 170 | 10 | 96 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
+++++e++ e+ Lk++++ Lq++qR+llGe+L++L++keLqqLe+qLe slk+iRskKn+ll+e+i+elqkkek+l+++n+ L+k
ORUFI07G22480.2 84 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170
467789*****************************************************************************9987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 32.085 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 7.3E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.32E-42 | 2 | 74 | No hit | No description |
| SuperFamily | SSF55455 | 1.44E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 5.1E-28 | 85 | 170 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.728 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 268 aa Download sequence Send to blast |
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVALIVFST KGKLYEFSSH 60 SSMEGILERY QRYSFDERAV LEPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLDTL 120 TIKELQQLEH QLEYSLKHIR SKKNQLLFES ISELQKKEKS LKNQNNVLQK ITTKAVLEVK 180 PFCLHSSEQL METEKEKNNA IINTNREEQN GATPSTSSPT PVTAPDPIPT TNNSQSQPRG 240 SGESEAQPSP AQAGNSKLPP WMLRTSHT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6byy_A | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6byy_B | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6byy_C | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6byy_D | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6bz1_A | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6bz1_B | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6bz1_C | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| 6bz1_D | 2e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. | |||||
| UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AJ011675 | 0.0 | AJ011675.1 Oryza sativa mRNA for MADS-box protein. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015647484.1 | 1e-179 | MADS-box transcription factor 18 isoform X2 | ||||
| Swissprot | A2YNI2 | 1e-180 | MAD18_ORYSI; MADS-box transcription factor 18 | ||||
| Swissprot | Q0D4T4 | 1e-180 | MAD18_ORYSJ; MADS-box transcription factor 18 | ||||
| TrEMBL | A0A0E0QAY7 | 0.0 | A0A0E0QAY7_ORYRU; Uncharacterized protein | ||||
| STRING | ONIVA07G20220.1 | 0.0 | (Oryza nivara) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60910.1 | 6e-77 | AGAMOUS-like 8 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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