PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G21430.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 295aa    MW: 32246.2 Da    PI: 5.6001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G21430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-102192591055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  ORUFI07G21430.1 219 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 259
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14210275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12214271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.39E-12218263No hitNo description
PfamPF000108.5E-8219259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MERSYTSAVP LIEADVMAQF LGAHGDHCFT YEQMDESMEA MAAMFLPGLD TDSNSSSGCL  60
NYDVPPQCWP QHGHSSSVTS FPDPAHSYGS FEFPVMDPFP IADLDAHCAI PYLTEDLISP  120
PHGNHPSARV EEATKVVTPV ATKRKSSAAM TASKKSKKAG KKDPIGSDEG GNTYIDTQSS  180
SSCTSEEGNL EGNAKPSSKK MGTRANRGAA TDPQSLYARK RRERINERLR ILQNLVPNGT  240
KVDISTMLEE AVQYVKFLQL QIKLLSSDDM WMYAPIAYNG VNISNIDLNI SSLQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.10.0transcription factor bHLH54
TrEMBLA0A0E0QAK20.0A0A0E0QAK2_ORYRU; Uncharacterized protein
STRINGORUFI07G21430.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.17e-39root hair defective 6-like 4