PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G20830.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 635aa    MW: 67739.2 Da    PI: 5.9163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G20830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-056183123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ Cgk F r  nL+ H r H
  ORUFI07G20830.1 61 FVCEVCGKGFQRDQNLQLHRRGH 83
                     89*******************88 PP
2zf-C2H215.64.6e-05139161123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk++  + +Lk H +t+
  ORUFI07G20830.1 139 WTCQRCGKRYAVQADLKAHTKTC 161
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-86083No hitNo description
Gene3DG3DSA:3.30.160.601.4E-56183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0146183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM0035588104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-8134159No hitNo description
PROSITE profilePS501578.787139167IPR007087Zinc finger, C2H2
SMARTSM0035590139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MPPNPTGTEG EPGPAVEPAP AGAGAGAAPV VKKKRNLPGT PDPDAEVIAL SPGTLLATNR  60
FVCEVCGKGF QRDQNLQLHR RGHNLPWRLR QRGPGAAPPR RRVYVCPEPG CVHHNPTRAL  120
GDLTGIKKHF CRKHGEKRWT CQRCGKRYAV QADLKAHTKT CGTREYRCDC GTLFTRRDSF  180
VTHRAFCGAL VEETGRVLAV PAPPSPRPPD LEAEENVDKD KDTEEEVKEK EKEKELEENE  240
DSPVAEVDEP QPSQAVAEVP QQCAPSPPPP PPILQEHPQP VVAVVPNVDE QEVVAKPAVI  300
AKIEVEDERD EEVCFQEVDR YKDAELEDSN LLDNDTPMLP CFLPSPSEAI GTDGSSTSCG  360
TGSSVTNAIA PATTTSTFAG LFASVTTSST PQSRSLRDLI GVDPTFLCLA IGAPSSLFPQ  420
TNASDPCSFA PPPAPHMSAT ALLQKAAEVG ASQSSSSFLK EFGLAASTSS SPPSKLSQGR  480
FTTGNTPTTS HPHPHPHPHP HPPQGRFMDN VPQPPLPAKL PHRMFTDNSV QQWHHRSNQQ  540
MEMEPGPMLP GGLGLGLTYD SGNSGLPDLM MGPSALYGPK PATLDFLGLG IGGTMGGSTA  600
NGGLPALMVG GELDMGSAQA PWEEAKRKTN GRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-30135197365Zinc finger protein JACKDAW
5b3h_F9e-30135197365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041850.0AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12.
GenBankAP0042760.0AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0protein indeterminate-domain 1
TrEMBLA0A0E0QAD10.0A0A0E0QAD1_ORYRU; Uncharacterized protein
STRINGORUFI07G20830.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.15e-93C2H2 family protein