PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G19520.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 788aa    MW: 87740.2 Da    PI: 8.197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G19520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.2e-19286385198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  ORUFI07G19520.1 286 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 377
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  ORUFI07G19520.1 378 KLVMGFRK 385
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-29282387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-19283385IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-22284385No hitNo description
PROSITE profilePS5086311.251286387IPR003340B3 DNA binding domain
SMARTSM010195.7E-21286386IPR003340B3 DNA binding domain
PfamPF023626.4E-16286385IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17541591IPR011124Zinc finger, CW-type
PfamPF074963.9E-11546588IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MCARKSHAAM APSQIWSSSM HMAQNVADRK DNFVKSWRPP AGQFSSQWRQ NNMWSMSTMQ  60
SDLQQRLAFE FDRPSGSEKL LPGRTFIHAH EKKFDDMHDR STTPAGMNQI MRERYANGHT  120
QHTTLDPTYA YTLYHREGTN PNLHDHSHHA GENDHLTARK GVTSDPCSSV STTFKLDSHH  180
PSILKDDPSA VPAGLSSNFS SANGPKDHIR IGPTQQQQQM ASSSLQKQFY SHSVIDNDFQ  240
AQLRNGRPRM DAKARSQLLP RYWPRITDQE LQHLSGDSNS VITPLFEKML SASDAGRIGR  300
LVLPKKCAEA YFPAISQAEG LPLKVQDATG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM  360
QLQAGDTVTF SRIDPEGKLV MGFRKATNLS AEQDQPTKPA NGVLPPPEAN NKVVVPDSSP  420
NAAVPRPIKV NTESKSSSPV EQATACKIDK GALPQKEGPG TSSSSPLPVK RKATSVGPKI  480
KRFHMDSEES MELKITWEEA QELLRPPPKA PSIVVVDGHE FEEYEEPPIL GRRTYFVTDQ  540
SGENHQWAQC EDCSKWRKLP VDALLPSKWT CSDNKWDSER SSCDSAQEIN MEELGEMIPI  600
KPGAAKKTKG KVDTDNIDVS DGLDTLANLA ILGEGESLPS QPTTRHPRHR PGCSCIVCIQ  660
PPSGKGPKHK QTCTCNVCMT VRRRFRTLMM RREKRQQSEK DSGVPRKREP GQSSEPVPQS  720
GSGAHPTSTS SPHQRADTNG EGPEDMSIDN KRTSSPVKNQ IDLNSQPERE DEQSPKSDAT  780
RLLRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-652643882126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0E0Q9X30.0A0A0E0Q9X3_ORYRU; Uncharacterized protein
STRINGORUFI07G19520.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-145HSI2-like 1