PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G18720.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 227aa    MW: 24878.8 Da    PI: 4.6598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G18720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000276687526
                     HHHHHHHHHHHHHHHHHHHHCT CS
              HLH  5 hnerErrRRdriNsafeeLrel 26
                     + e+ErrRR r+N  ++ Lr +
  ORUFI07G18720.1 66 NLEAERRRRGRLNGNIFALRAM 87
                     5689***************975 PP
2HLH11.30.00063871043855
                      STCHHHHHHHHHHHHHHH CS
              HLH  38 lsKaeiLekAveYIksLq 55 
                      +sK ++L  A+e+Ik+Lq
  ORUFI07G18720.1  87 MSKEATLSDAIEHIKNLQ 104
                      79***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1060120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-463113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008467109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MPRRARARGS GGGGGEEVKV EDDFVDSVLN FGGGGGGEED GDDGEEEQQQ QQAAAAAMGK  60
EFKSKNLEAE RRRRGRLNGN IFALRAMSKE ATLSDAIEHI KNLQNEVLEL QRQLGDSPGE  120
AWEKQGSASC SESFVPTENA HYQGQVELIS LGSCKYNLKI FWTKRAGLFT KVLEALCSYK  180
VQVLSLNTIS FYGYAESFFT IEVKGEQDVV MVELRSLLSS IVEVPSI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a crucial role in tapetum development. Required for male fertility and pollen differentiation within the developing anther. Plays a major role in maintaining tapetum development, starting in early meiosis. Required for pollen mother cell meiosis. May regulate the anther-specific cysteine protease CP1 and lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for anther development. Functions in parallel with GAMYB to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2425160.0AK242516.1 Oryza sativa Japonica Group cDNA, clone: J080312F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657813.11e-128PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotB9FXT31e-123UDT1_ORYSJ; Transcription factor UDT1
TrEMBLA0A0E0Q9M81e-164A0A0E0Q9M8_ORYRU; Uncharacterized protein
STRINGORUFI07G18720.11e-165(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-16bHLH family protein
Publications ? help Back to Top
  1. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]