PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G15560.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 211aa    MW: 22050.9 Da    PI: 10.0233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G15560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.95.5e-12111474127
              NAM   4 Gfr..FhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkya.....tgkrknratk... 79 
                      Gfr  F P+d++l+++ L++k+++ +   +++  +++v d + + P +L +       +++ + wyfFs r ++ a     +++ ++ra+    
  ORUFI07G15560.1  11 GFRipFLPSDSDLLDCLLRPKIASGRvdPRFAPLVHDVaDAFALPPAQLAAahapaPGAGGAEAWYFFSVRPRARAraragSKRAASRAVGggg 104
                      6665599****************9995433334599999**********843454422236779*****9999888333222223444444332 PP

              NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        +W + g +k+v        g  + + + + +a   +  +W+m ey 
  ORUFI07G15560.1 105 GKRWCSMGAKKAVEG-----GGYCQRFRYKERTAAGVVAPRWMMVEYG 147
                      335******999977.....57889999998888888999*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.17310177IPR003441NAC domain
PfamPF023653.4E-912147IPR003441NAC domain
SuperFamilySSF1019411.57E-2215177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPLADPAAE GFRIPFLPSD SDLLDCLLRP KIASGRVDPR FAPLVHDVAD AFALPPAQLA  60
AAHAPAPGAG GAEAWYFFSV RPRARARARA GSKRAASRAV GGGGGKRWCS MGAKKAVEGG  120
GYCQRFRYKE RTAAGVVAPR WMMVEYGVAQ EHDGEGVAQE HGGEGVAELV LCKIFRSPEP  180
SRRSESGSPS SSSSASASPS CSGGRKRKAA E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039560.0AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBankAP0042590.0AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658578.14e-55PREDICTED: NAC domain-containing protein 72-like
TrEMBLA0A0E0Q8K51e-146A0A0E0Q8K5_ORYRU; Uncharacterized protein
TrEMBLQ8LI001e-146Q8LI00_ORYSJ; Uncharacterized protein
STRINGORUFI07G15560.11e-147(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153951017