PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI07G14090.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 345aa MW: 37411.8 Da PI: 8.8871

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI07G14090.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	33.1	9.5e-11	250	274	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC +lL+YP+GA+s++Ca+C tV ORUFI07G14090.2 250 CSGCCNLLMYPAGATSICCAVCGTV 274 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.4E-10	247	277	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.0E-8	250	274	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEVWC 60 CVPPHPLPHA ATRLESLRSR TGVIVDRAIL AEDKKHAPRS ESPWLKKPMH GVSGSTAMAS 120 TPWSSMPPSS HSLAFTGFFR TEIFLAFSSA SLESFCRERK GDFSCLTVAG ICEASTSDAI 180 GSGSWHSNAG SPCPISNSCA IYSSQWYGFQ LGTARTQLLF KFFFPDVGWS PRNVGTCHSV 240 RPGAQSQLVC SGCCNLLMYP AGATSICCAV CGTVTAVPAP EQKSSCNVHE NKERLKGNTN 300 GFRAPQRCAR RVDGACTQVP NPLTLAMSLE KYTLKLLWSY LHCCV

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEVWC  60
CVPPHPLPHA ATRLESLRSR TGVIVDRAIL AEDKKHAPRS ESPWLKKPMH GVSGSTAMAS  120
TPWSSMPPSS HSLAFTGFFR TEIFLAFSSA SLESFCRERK GDFSCLTVAG ICEASTSDAI  180
GSGSWHSNAG SPCPISNSCA IYSSQWYGFQ LGTARTQLLF KFFFPDVGWS PRNVGTCHSV  240
RPGAQSQLVC SGCCNLLMYP AGATSICCAV CGTVTAVPAP EQKSSCNVHE NKERLKGNTN  300
GFRAPQRCAR RVDGACTQVP NPLTLAMSLE KYTLKLLWSY LHCCV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	1e-152	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0Q816	0.0	A0A0E0Q816_ORYRU; Uncharacterized protein
STRING	ORUFI07G14090.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	4e-13	lsd one like 1