PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI07G14090.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LSD

Protein Properties

Length: 356aa MW: 38584.3 Da PI: 9.0679

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI07G14090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	33	9.9e-11	261	285	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC +lL+YP+GA+s++Ca+C tV ORUFI07G14090.1 261 CSGCCNLLMYPAGATSICCAVCGTV 285 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.5E-10	258	288	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.2E-8	261	285	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEVWC 60 CVPPHPLPHA ATRLESLRSR TGVIVDRAIL AEDKKHGGFK RLVITIGTPR SESPWLKKPM 120 HGVSGSTAMA STPWSSMPPS SHSLAFTGFF RTEIFLAFSS ASLESFCRER KGDFSCLTVA 180 GICEASTSDA IGSGSWHSNA GSPCPISNSC AIYSSQWYGF QLGTARTQLL FKFFFPDVGW 240 SPRNVGTCHS VRPGAQSQLV CSGCCNLLMY PAGATSICCA VCGTVTAVPA PEQKSSCNVH 300 ENKERLKGNT NGFRAPQRCA RRVDGACTQV PNPLTLAMSL EKYTLKLLWS YLHCCV

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEVWC  60
CVPPHPLPHA ATRLESLRSR TGVIVDRAIL AEDKKHGGFK RLVITIGTPR SESPWLKKPM  120
HGVSGSTAMA STPWSSMPPS SHSLAFTGFF RTEIFLAFSS ASLESFCRER KGDFSCLTVA  180
GICEASTSDA IGSGSWHSNA GSPCPISNSC AIYSSQWYGF QLGTARTQLL FKFFFPDVGW  240
SPRNVGTCHS VRPGAQSQLV CSGCCNLLMY PAGATSICCA VCGTVTAVPA PEQKSSCNVH  300
ENKERLKGNT NGFRAPQRCA RRVDGACTQV PNPLTLAMSL EKYTLKLLWS YLHCCV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012615	1e-152	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0Q815	0.0	A0A0E0Q815_ORYRU; Uncharacterized protein
STRING	ORUFI07G14090.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21731	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	4e-13	lsd one like 1