PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G13350.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 617aa    MW: 66192.8 Da    PI: 3.9363
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G13350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.77.7e-2681471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dke 91 
                      lppG+rF+P d+elv++yL +++++++++l+ vi+e+d + + Pw L +++  + +e +fF++++ k+ +gkr++r +   g+W+ +    d e
  ORUFI07G13350.1   8 LPPGVRFDPADDELVSRYLLRRLRKQPIPLHGVIHEADPLGAPPWMLLAAHGRGGDEAFFFAEARAKNVKGKRQKRtVEGGGFWQGQRVcvDGE 101
                      79****************************99***************867677888********************555599**9665423444 PP

              NAM  92 vlsk.....kgel........vglkktLvfykgrapkgektdWvmheyrl 128
                       ls      +            + k +L f+ +++++g ++ Wvmhey++
  ORUFI07G13350.1 102 RLSVpggdgG--GevgggleiEWRKYMLSFF-AEEERG-SSGWVMHEYAI 147
                      4443566651..0445666647777888999.455554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-294166IPR003441NAC domain
PROSITE profilePS5100527.2128166IPR003441NAC domain
PfamPF023659.7E-169146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MAAAADGLPP GVRFDPADDE LVSRYLLRRL RKQPIPLHGV IHEADPLGAP PWMLLAAHGR  60
GGDEAFFFAE ARAKNVKGKR QKRTVEGGGF WQGQRVCVDG ERLSVPGGDG GGEVGGGLEI  120
EWRKYMLSFF AEEERGSSGW VMHEYAITAP DDLASWPIRL YRVRFSGHGK KRKREPERLG  180
ARVHDDDVDG GQRAAPRRAV TETALFVQPS AVDCAESAGQ SFSGAIEPVF HDLPDMMPEQ  240
ADAGDTTETT AAVVNLTDAM SEQPVLPLAA DGDDQSSYDD GGMERATPCT PMSETALFEQ  300
QGPPGNADCA DHQSSYGVID PAFCEQADAG EAETTVSAAV VNQNYSMALC DFNFPEVLSY  360
VDFTAGMEPS WQQRWPPMSE SAPFEQQEPP LAPVAMVDLP PGNADCADHQ SCSGVIDPAF  420
RDLPDMTVLP PEQADTGGGA ETTTAMVSLT DKLKYSSSMD GEAAQAWCDF DFPESTDEAL  480
SYIDFTAGAH TDNDGGVSET AMFEQLGSPP QHDPLPMDAD GADQSSSGPL IDTVFRDHAE  540
PIVLPLEQAD TGGGAAAAVN LMDKQKYSSS MDGEAVPAWC DSDFPESIDE VLSYIDVSTD  600
DTSCIDFSMD DLFDLAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056410.0AP005641.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0027N13.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645973.10.0uncharacterized protein LOC107275504
TrEMBLA0A0E0Q7S00.0A0A0E0Q7S0_ORYRU; Uncharacterized protein
STRINGORUFI07G13350.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15243914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-12NAC domain containing protein 41