PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G09950.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 605aa    MW: 64292.4 Da    PI: 3.7925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G09950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.61.6e-25111441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...dk 90 
                      lppG+rF+Ptd elv+++L ++++gk+l+l+ vi e+d ++v Pw+L ++ +++ +e +fF++++ k+ +g+r++r +   g W+ +      +
  ORUFI07G09950.1  11 LPPGLRFDPTDGELVSRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAE-HGRGDEGFFFAEARAKNGKGSRQKRtVEGGGLWQGQRVcadGE 103
                      79****************************99***************744.4567799******************4455899*9665422222 PP

              NAM  91 evlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++l+      + e v+ k  L f+ ++ ++g ++ Wvmhey++
  ORUFI07G09950.1 104 KLLVPdgggvEVEIVWRKYLLSFF-AEGERG-SSGWVMHEYAV 144
                      333335555444559999999999.444554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-328163IPR003441NAC domain
PROSITE profilePS5100529.62511163IPR003441NAC domain
PfamPF023658.7E-1512143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MAAGGGGADG LPPGLRFDPT DGELVSRFLL RRLQGKPLPL NGVILEADPL SVPPWKLLAE  60
HGRGDEGFFF AEARAKNGKG SRQKRTVEGG GLWQGQRVCA DGEKLLVPDG GGVEVEIVWR  120
KYLLSFFAEG ERGSSGWVMH EYAVTSPAEL AASPIRLYRV RFSGHGKKRK REPQSGEDGV  180
GRARAAPQSA GTETALLEER VMPPQPAPQS VGTEDALVEE RIPPPQPVPI PPIAGTEDAL  240
DVGTEDVRGR AAPQSAGTES SLLEECVLPP QTAPQITGTG VALLDEVVPP PQTVSISPPA  300
ALVDAVDDAD CANQGCSGVM DDSTMVFSHL PDMITLPAEE GDAAGGAALA SMDYSWADFE  360
FPEINMDELP SCIDFTTTDP SCLDIELSMG DLHEPQSTGI ESDLLEEFVP QPQPVLVPPL  420
AALVEVADSS EGPDQGCSVV MHDSSAVFTH LSDPIVLPEE EEADRPDAPA GTMSLDYQNY  480
SLSDFEFPEY PLLDVAGDAD GADQCSSNVM DDSSMVFSHL EDLITLPAEE AEADACSAAP  540
APSLDNQKYS SQGIIDSEAP ALSDFEFPET IDEVLNSINF TMADPSCLDM EFSMDDLLDF  600
DPPAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-111114215138Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051720.0AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01.
GenBankAP0058800.0AP005880.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0Q6J10.0A0A0E0Q6J1_ORYRU; Uncharacterized protein
STRINGORUFI07G09950.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-13NAC domain containing protein 47