PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G07980.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 236aa    MW: 26879.4 Da    PI: 11.0359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G07980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-11998699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-..EEEEEE-SS.SEE..EEEEE- CS
               B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD..fvvFkldgr.sefelvvkvfr 98
                     ++  + +++ l +p   +++  +k+  ++tl+l++ +g + +vk+     +++ ++t GWkeF ++ gLk g+  +vvF+   + s+ +l+v +f+
  ORUFI07G07980.1  9 VKIKTASQDYLPIPVAVTKASRLKH--GRTLKLMTAHGLKIRVKV--AEARDKLYMTIGWKEFIQQTGLKMGEskSVVFR---TlSKSRLNVIIFN 97
                     5566778888999999998888884..569***************..***********************7763379999...4467777999887 PP

                     S CS
               B3 99 k 99
                     k
  ORUFI07G07980.1 98 K 98
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-14499IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.461499IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-15499IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-9898IPR003340B3 DNA binding domain
SMARTSM010190.0078899IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MHSPTFSMVK IKTASQDYLP IPVAVTKASR LKHGRTLKLM TAHGLKIRVK VAEARDKLYM  60
TIGWKEFIQQ TGLKMGESKS VVFRTLSKSR LNVIIFNKEG YSRCPIPDKA AKALINNRSS  120
SAPSFSTKST APRHPSSTNV EGRVHKTKSH KNQHIQLRFK HHIGSTSTAN TKRIVKDMCC  180
YNKRMKLSSE VKNYVRDIAQ FLDYSSKFYI VTIKNIHEVR QGGKIFHLLS IYSLEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84YL31e-136Y7282_ORYSJ; Putative B3 domain-containing protein LOC_Os07g12820
TrEMBLA0A0E0Q5V81e-174A0A0E0Q5V8_ORYRU; Uncharacterized protein
STRINGORUFI07G07980.11e-175(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1825266