PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G07120.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 668aa    MW: 73209.9 Da    PI: 5.822
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G07120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.2e-06483522454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h   ErrRR+++N++f  Lr+l+ ka           +iL  ++eY+k+L
  ORUFI07G07120.1 483 NHVLKERRRREKLNEKFIILRSLMDKA-----------SILGDTIEYVKQL 522
                      79999*****************98555...........9999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-477200IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.947479529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-13480540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-11483527No hitNo description
Gene3DG3DSA:4.10.280.102.1E-9483535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-9485528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0010214Biological Processseed coat development
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAGGEAQAAL QAVAQSLRWT YCLLWQLCPH QGSSLVWGEG HYNGAVKTRK STVMQPPPAE  60
EEDDADHAAR HRSRQLRELY DWLQQAGENS SGGVQTSSTT ASRRPGAALS PEDLTETEWF  120
FLMSASYSFP PGIGLPGRAF ARRGHVWLTG ANEVDSKVFL RAILAKTVVC IPVVDGVLEI  180
GTTEKVEEDM GLIQYARGIF MDQHGIHMKP TLSQHSTSNP VTHCTHQHPI QVQMQLGITS  240
QTKFDYSDEL NADEENDDTE EEGMSGSDTN NTDTERNSGQ LQLQMQDQLN MVSNDHQTIP  300
NNAVSSELMQ CEMSEVVRDG CSNNILEDEI QMLMDCQNSN CQLNLQGPDE PCHSWHFLCE  360
ELQNDYQPAT EDQVASPENT HYPKTLMTIL HYNTLRQQEM NIKNYLPVSE KSSFSRWTTP  420
EGSDDNKTMI SPGTTQRMLK SILMIVPSSH CSYRGAETPE SRGGKGASGT RKVGAIQGDF  480
SANHVLKERR RREKLNEKFI ILRSLMDKAS ILGDTIEYVK QLRNRIQELE SSSSSSRAAA  540
RAPSAAAAGR RRKRSAAAAT ATAAEGMSSS NGRNGGEAAE VVQVSIIESD ALLELRCGCG  600
GGGGGVVLLR VMQAMQELQL EVTAVQASCA GGELLAELRA KVKGRRRSSI AQVKRAIHLV  660
LSSSSISP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-19720010192Transcription factor MYC3
4rqw_B3e-19720010192Transcription factor MYC3
4rs9_A3e-19720010192Transcription factor MYC3
4yz6_A3e-19720010192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1487492ERRRRE
2488493RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF3030610.0JF303061.1 Oryza sativa Indica Group SD7-1D bHLH transcription factor (SD7-1/Rc) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646360.20.0LOW QUALITY PROTEIN: basic helix-loop-helix protein A-like
TrEMBLA0A0E0Q5K70.0A0A0E0Q5K7_ORYRU; Uncharacterized protein
STRINGORUFI07G07120.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-62bHLH family protein