PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G05220.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 405aa    MW: 43625.2 Da    PI: 5.4223
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G05220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.4e-17218314199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k lt  dv+k++ +++pk+ a++      +++   ++ l+++d+sg++W ++++++ + ++  +++GW eF +angL +gD  vF+  +r +
  ORUFI07G05220.1 218 FVKPLTYTDVTKNR-FMVPKDDAAAGvlphiQLN--DDVPLRIKDLSGKEWAFNYTWKAHTRM--FRNGWMEFSNANGLVTGDNAVFM--RRGN 304
                      88999999999985.999*****88899966444..6778***************87777655..9**********************..5578 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +e+++ v+r+
  ORUFI07G05220.1 305 GEMFMAVRRT 314
                      8888888886 PP
2Auxin_resp24.99.1e-10331398368
       Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsd 68 
                       +a+ +++Fev Y+ r+   eFvv+++ v + l+ ++++Gm + +    ed +  ++  +G v+++++
  ORUFI07G05220.1 331 WRAARREPFEVSYCSRQDGDEFVVPRDIVDDGLRARFAPGMAVNFVWAVEDGKLPTIgpQGEVISIEN 398
                      5678999***********************************99999999977766666999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-19215316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-20216318IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-16217309No hitNo description
PROSITE profilePS5086313.493217315IPR003340B3 DNA binding domain
SMARTSM010191.3E-10218315IPR003340B3 DNA binding domain
PfamPF023622.3E-13218313IPR003340B3 DNA binding domain
PfamPF065075.6E-6332399IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRAAPLPHPC WPRFVDGLRG EDDSGGHEYT SVSGIHVPSS SGVAFVSFGQ CPQEVISTDL  60
RLGLGPIAAT APLQPPPPPA AAAAAGSPSA TTPEPGHGEA TPTTSSSAQF QTQAQQVTRD  120
MWMACAAPKS GRLPTVGSLV YYFPDGHAEQ CLSRPQEPLP GRIFLCKVTD VRLGAAATNE  180
ALATISLVPI AADDHAFQLQ APADPDPAPA QSQSLVSFVK PLTYTDVTKN RFMVPKDDAA  240
AGVLPHIQLN DDVPLRIKDL SGKEWAFNYT WKAHTRMFRN GWMEFSNANG LVTGDNAVFM  300
RRGNGEMFMA VRRTRNRPAP FSVEEAIEAV WRAARREPFE VSYCSRQDGD EFVVPRDIVD  360
DGLRARFAPG MAVNFVWAVE DGKLPTIGPQ GEVISIENYA TSIGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-2011740319322Auxin response factor 1
4ldy_B3e-2011740319322Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882780.10.0B3 domain-containing protein Os07g0183700
SwissprotA3BH910.0Y7838_ORYSJ; B3 domain-containing protein Os07g0183700
TrEMBLA0A0E0Q4X30.0A0A0E0Q4X3_ORYRU; Auxin response factor
STRINGORUFI07G05220.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2628755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.13e-25auxin response factor 16