PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G05160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 644aa    MW: 72207 Da    PI: 8.6126
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G05160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24.1e-15324422198
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k lt  d+ k+  r+++pk+ ++     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  +++
  ORUFI07G05160.1 324 FVKPLTCTDAVKNrYRFIVPKRETAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-DSG 414
                      56666655555553899******9666999555558888***************776665..99***********************765.444 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      e +++++r
  ORUFI07G05160.1 415 ERYMGLRR 422
                      44666655 PP
2Auxin_resp27.61.2e-10440515482
       Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkm..afetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+  ++Fev+Y  r+   eFvv++  v++al+ k+++Gm + +  a+e++  ++   +G v++++++       S Wr++
  ORUFI07G05160.1 440 RAARLEPFEVTYLSRQDGDEFVVPCGIVHNALRAKFTPGMVVNFvwAVEEDRLPNVGPQGKVIAIENY-----ATSIWRMI 515
                      567779**********************************877611555555666666********95.....55888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.1E-16321421IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19322423IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-15323422No hitNo description
PfamPF023622.5E-11324421IPR003340B3 DNA binding domain
SMARTSM010199.0E-5324424IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07325424IPR003340B3 DNA binding domain
PfamPF065072.7E-7441515IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQSNPVRFLD ADNSDDHRSA NDSVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL  60
PVAVQEVIAA AGRAAAGEQF TATYRTRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW  120
ALEDGAPPSV GPHGKITAIH DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA  180
PPPPLSPKRL KSSEDHLPPP KASASAAAAK ASPSSSAQAQ QFSITREMWR ACAAPKSGRL  240
PAVGSFVYYF PDGHAHQCPS RPPEPLPGRV FLCKVTAVRL DATRNELFAT MSLIPVARDQ  300
AIQPQAPADP GPSSPQVQTT LVSFVKPLTC TDAVKNRYRF IVPKRETAMG VLPQLQLNEH  360
VPLYIKDMHG KEWVINYTWK EYTHMLSSGW IKFANANRLV TGDNVVFMRS MDSGERYMGL  420
RRTLKPEPVS VDEVIEAVWR AARLEPFEVT YLSRQDGDEF VVPCGIVHNA LRAKFTPGMV  480
VNFVWAVEED RLPNVGPQGK VIAIENYATS IWRMIQVEWP SCAGMNRYVN FWQIREVLGE  540
SSFEASTCIV RSQDYSPAPQ RNLVNALQLP DGTKQLQQNK KSVSSSSTFR LFGKKMTPGV  600
PPRRDTSGLS GQVSLFSHYL PHDEDDGQVP TMRQRLETLF PDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-2422354818363Auxin response factor 1
4ldx_B1e-2422354818363Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882778.11e-163B3 domain-containing protein Os07g0183300/Os07g0183600
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLA0A0E0Q4W60.0A0A0E0Q4W6_ORYRU; Auxin response factor
STRINGORUFI07G05160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.45e-29auxin response factor 2