PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G05150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 784aa    MW: 85931.3 Da    PI: 7.2502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G05150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.2e-19120234199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkegDf 79 
                      f+k+l+p+dv++++ lvlp     eh         +++++     ++d++g+++e+ +i++kk++ry+l+       +GW++Fvka++L ++D+
  ORUFI07G05150.1 120 FEKQLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LFDVRDLRGKRFEFVHIWDKKRCRYMLGdlgvndnDGWRGFVKAKRLATRDT 208
                      99***********9.9999774..5659999887666555..78999*********************************************** PP

                      EEEE......E-SSSEE..EEEEE-S CS
               B3  80 vvFk......ldgrsefelvvkvfrk 99 
                      vvF+       dg+ ++el+v+v+r+
  ORUFI07G05150.1 209 VVFMrrgggdGDGDGDGELLVGVRRA 234
                      ****7776555566788888888886 PP
2B377.71.3e-24492597199
                      EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+k+l+psd+ ++     +++v+pk+ a+eh ++ + + +l++++++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F++
  ORUFI07G05150.1 492 FDKKLSPSDAAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTNLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMR 583
                      899******999988888899**********776.455.9********************99999999*************************4 PP

                      -SSSEE..EEEEE-S CS
               B3  85 dgrsefelvvkvfrk 99 
                       +r ++e++v+v+rk
  ORUFI07G05150.1 584 -RRPGGEPLVGVRRK 597
                      .44**********98 PP
3Auxin_resp28.56.4e-11257333276
       Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                      + a++  ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  ORUFI07G05150.1 257 WLAMQGVTPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SISGTVRTFDHLRPWRMLE 333
                      66778889********************9875333344999***********998875.569******9999966555 PP
4Auxin_resp59.91.1e-20614690183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ +as++++F+v+Y+P+++t+eFvv++e+ve +   ++++G+R+++ ++ +d+++r++   +Gtv++v++       +S+Wr+L+
  ORUFI07G05150.1 614 AWLDASSAQPFRVTYCPWQGTAEFVVRREEVEGSP--PLAPGTRVRLLMNPDDARRRSQppvYGTVRDVHC-------RSEWRMLE 690
                      67889*****************************9..*********************99999******99.......899**995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-21113238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-14115217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-10118211No hitNo description
PROSITE profilePS508638.402119235IPR003340B3 DNA binding domain
SMARTSM010190.0043120235IPR003340B3 DNA binding domain
PfamPF023623.5E-16120234IPR003340B3 DNA binding domain
PfamPF065072.0E-5261336IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.109.2E-19486598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-15487598IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-12491596No hitNo description
SMARTSM010192.9E-7492598IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715497598IPR003340B3 DNA binding domain
PfamPF023621.3E-14507597IPR003340B3 DNA binding domain
PfamPF065073.3E-7618689IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MAQPPDDAAA AAVPPPVVID RDVWHACAVP YSGVLPGVGT LVYYIPHGHI EQCAEDPALL  60
LSRLPDPIHP VPCTVADLVL DVDAESGEAY ATISLLPGSH DDTTARRQVP AHGEPGFRFF  120
EKQLSPADVT SNALVLPAGA EHVLPPLDIA AYQTARLFDV RDLRGKRFEF VHIWDKKRCR  180
YMLGDLGVND NDGWRGFVKA KRLATRDTVV FMRRGGGDGD GDGDGELLVG VRRAPRARGG  240
HHPRPGVEDN KVVSEVWLAM QGVTPFEVTY YPREGTFEFV VSRDEYIGFS FSPFYPFVPG  300
TTVHLRMNPL QIAQSISGTV RTFDHLRPWR MLEVDWDQAA SPISYRIHRQ VNSWQVLRQP  360
QPAATTSAVR IRDAIVATPQ VQIMAPPRPP PPTTTTGMVP VIDHDIWLAC ATPYSGRLPV  420
VGSAVYYFPQ GHAEQCHTCT TCLIPDNRHR LRCTSDDSYA MISLFPGDCY VTHRPLPAAR  480
DPVGGQREFC FFDKKLSPSD AAANGGGSGA LFVIPKPSAA EHVLPRIPDL RVTNLQGGRW  540
EFGHTWSDAD TDRRSSSHTL AAGWSAFVKA KRLCVGDTVI FMRRRPGGEP LVGVRRKPHG  600
GMPVGIPDKH VADAWLDASS AQPFRVTYCP WQGTAEFVVR REEVEGSPPL APGTRVRLLM  660
NPDDARRRSQ PPVYGTVRDV HCRSEWRMLE VDWDRDSPLA PTMNRRVNSW QVQPVQLALP  720
PQGSDEEAAA ATTSTAHAGD ATTSAPSLAL QLQTMASSSS SSAPIIPSRG SAFRIVNPRD  780
GSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-251871349388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0Q4W50.0A0A0E0Q4W5_ORYRU; Auxin response factor
STRINGORUFI07G05150.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.19e-29auxin response factor 17