PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G03340.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 329aa    MW: 36182.8 Da    PI: 11.5423
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G03340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA621.8e-19205308358
        CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekk................................................ldeksrkpylheSRhkhAl 48 
                      p+YVNaKQ+++I++RR +Rak+e+e++                                                 ++++ +pylheSRh+hA+
  ORUFI07G03340.1 205 PIYVNAKQFNGIIRRRLARAKAEREHRvsrsrkvrrrrrrrrrrvlvvvsfpcqfagelavtvtvtvtvtdssssSSSATAQPYLHESRHRHAM 298
                      9*************************************************************************977999************** PP

        CBFB_NFYA  49 rRpRgsgGrF 58 
                      rR+RgsgGrF
  ORUFI07G03340.1 299 RRARGSGGRF 308
                      *********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-16201311IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115226.408202311IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.4E-29205308IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860207227IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIKERVDMHV NAALSFQDHG HGLQAITGRG GNGGAAAHAL PWWAGAGAGA GSQTLLGTGG  60
GEESFCQLSN TIMEDTRILQ NHHHQILAAG RQLQQRHHFP AMPPERHHHP PPPAPGSPAM  120
KFPIISGDSD LGKDLKFHES SAPTIAAYSP LQEYQGHFEL ALGHSMVCTN FCNSEQSYGV  180
YSPYGAQTMA GRMLLPPAIA TDVGPIYVNA KQFNGIIRRR LARAKAEREH RVSRSRKVRR  240
RRRRRRRRVL VVVSFPCQFA GELAVTVTVT VTVTDSSSSS SSATAQPYLH ESRHRHAMRR  300
ARGSGGRFLN TKXRRRRTSP APVAIHPWL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239247RRRRRRRRR
2240247RRRRRRRR
3241247RRRRRRR
4292301RHRHAMRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054540.0AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-134nuclear transcription factor Y subunit A-2
TrEMBLA0A0E0Q4880.0A0A0E0Q488_ORYRU; Uncharacterized protein
STRINGORUFI07G03340.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.46e-10nuclear factor Y, subunit A8