PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI07G02530.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 430aa MW: 47201.4 Da PI: 9.0335

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI07G02530.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.4	5.2e-18	245	291	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq ORUFI07G02530.2 245 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 291 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.49E-17	237	295	No hit	No description
SuperFamily	SSF47459	1.57E-21	239	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.768	241	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.9E-22	245	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-15	245	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-18	247	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MVRDVPKQAG QKKKKIRRFV NPSSPPPYKN ATDTSPSFFL RFNFPDEIEP NYNYPSISST 60 RHLTLLPRHS HFLSTSKRSK KNEVSVTCRL SKNCGAMDAG ATARSSSSSA MMMNQKKPLL 120 SDGELVELLW QDGGVVAHAQ TRHRSSDVLA RSGVTGEEET ASACFANVDG HAAGALALAT 180 PTPTPRAAAR SDDVSSRLDE ADLSICGSNA VRGREELVDS LSEVADETRP SKRPAAKRRT 240 RAAEVHNLSE RRRRDRINEK LRALQELVPH CNKTDKASIL DEAIEYLKSL QMQVQIMWMT 300 TGIVPMMFPG THQLMPPMGM GLNTACMPGA QAQGLNQMQR TTYYMNNSLP NQMPQIPSPA 360 MNAPSVPDDM QNDNRIRGPR NPFLHCNDTL TATAQVPGLF TYGSQIAEQN EIQELLSGAV 420 IPSSSDGTIK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MVRDVPKQAG QKKKKIRRFV NPSSPPPYKN ATDTSPSFFL RFNFPDEIEP NYNYPSISST  60
RHLTLLPRHS HFLSTSKRSK KNEVSVTCRL SKNCGAMDAG ATARSSSSSA MMMNQKKPLL  120
SDGELVELLW QDGGVVAHAQ TRHRSSDVLA RSGVTGEEET ASACFANVDG HAAGALALAT  180
PTPTPRAAAR SDDVSSRLDE ADLSICGSNA VRGREELVDS LSEVADETRP SKRPAAKRRT  240
RAAEVHNLSE RRRRDRINEK LRALQELVPH CNKTDKASIL DEAIEYLKSL QMQVQIMWMT  300
TGIVPMMFPG THQLMPPMGM GLNTACMPGA QAQGLNQMQR TTYYMNNSLP NQMPQIPSPA  360
MNAPSVPDDM QNDNRIRGPR NPFLHCNDTL TATAQVPGLF TYGSQIAEQN EIQELLSGAV  420
IPSSSDGTIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	253	KRRTRAAEVHNLSERRRR
2	249	254	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN400276	0.0	JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015648043.1	1e-159	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
Refseq	XP_015648044.1	1e-159	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
Refseq	XP_015648045.1	1e-159	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
Swissprot	Q10CH5	2e-79	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A0E0Q3X2	0.0	A0A0E0Q3X2_ORYRU; Uncharacterized protein
STRING	ORUFI07G02530.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	6e-28	phytochrome interacting factor 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]