PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G02290.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 493aa    MW: 51314.4 Da    PI: 4.6237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G02290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.7e-08376402227
                      -S---SGGGGTS.--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartG.tCkyGdrCkFaHgp 27 
                      kt+lC  ++  G  C++G++Ck+aHg+
  ORUFI07G02290.1 376 KTKLCAEYYSRGlGCPRGNTCKYAHGE 402
                      7999988888888************96 PP
2zf-CCCH26.41.2e-08437463127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC++f  +G C + ++C+FaHg+
  ORUFI07G02290.1 437 YKTKLCKTFTSGGLCLFAANCRFAHGE 463
                      9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6373407IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.479374403IPR000571Zinc finger, CCCH-type
SMARTSM003560.018374402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-10376406IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6376402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-12435466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-8436466IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6436463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202436464IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5437463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774466493IPR000571Zinc finger, CCCH-type
SMARTSM003560.45467493IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5467492IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MADSEDGDHV ATTTTEQRYD DDGHLVPSSG GQEEEGSGGR DVVVPGGHVA EDYRSGVGVP  60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA  120
TGFGALPTSS MAEDSADHAD DDHLAEEEEE EHYIDDGPLV PSSGGQEEEG SGGRHVFVPG  180
GHDGEEDHPD DLVADLDLDL LVDGVVGPVP GGHLNADAPA FVPTTRGRQD LYSALSSSAP  240
AAGYRYRHYI TSSALAEAGH VSPFLGLPYA TAFDSPLDRE LVGPSSAPPP CSAASRAWLV  300
RCSSPLSDSE WTRRSILARE AAHTPASTVT GRGRFEFVPI PGAPYAPPPS FAPIAAGAGP  360
AARPLQQLAF GLEEHKTKLC AEYYSRGLGC PRGNTCKYAH GEDDLRLVVA VSSLADAGEG  420
SSSSDSSFAA LGGEDKYKTK LCKTFTSGGL CLFAANCRFA HGEVELGKKE PCWYFFSGQT  480
CPRGDTCGFR HSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0E0Q3U10.0A0A0E0Q3U1_ORYRU; Uncharacterized protein
STRINGORUFI07G02290.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-08C3H family protein