PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI07G02240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 656aa MW: 68652.8 Da PI: 5.5649 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 324 | 347 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+ +++ G C+ G+ C+++Hg+ ORUFI07G02240.1 324 IALCSKWRK-GRCHNGAACRYSHGE 347 589******.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0053 | 321 | 347 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 321 | 352 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-8 | 322 | 352 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-5 | 324 | 347 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.469 | 326 | 348 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 35 | 460 | 489 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.545 | 460 | 490 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MADPNGRRRL PTGDPDQANA SPSRRVSAVD GVTGGEGRPT YSHFPPGAYE PTDVAYGIRD 60 AANDERARAR ARARHDQGGG AHDHHHDRPR QDQRGEAHLH DLPGEKSEVP DVGPSDQQGK 120 EASDTDMAPL AALAKRSYDV NFPPLHEHRA APFPAPAPAS APAPAGTMGS SSAQVQGDGA 180 PDNHDHDPRH LPQQDQSGGA HPDDLHGEKT IGSGSDILDD SKRGMINAGP QHDRITTSNG 240 GSGSGSDKGK GVSYAGDKPA SSSSSSSSAG QQGSDTDKTP SAAAASSYAV NFPPLLPAPA 300 PVPAPAPAPA VAGAMGVANA HHKIALCSKW RKGRCHNGAA CRYSHGEEEQ RIVPEMRVGG 360 GGRPCPELAA AKGWCSSRDT IYVPANRDNP LLPIGQFPQD HVKSGSASAA VDMINSSAGD 420 DNARDFSSSP RLDVIAEAQG AAWGWDALWE DTGFAHCLHD PKTVLCWRYM YGGDDYCDLG 480 CDCFDAHSYN DLQSKIRTGV AAASRSYSVP HPDLDLDLSD VSQFAGVFSS QQQPPASDEW 540 NFAVGNMQQQ QQQRSMTPSA SSRATAATDA DGEDPPPPPP HPPSPSAEGS ASPPTTPGTP 600 TTGADEKNVG ELNDVDYPLL LPDAPAPAPA PAPAPPPSHT PIRHCHEPLR VFVVRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003829 | 0.0 | AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01. | |||
GenBank | AP004314 | 0.0 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646504.1 | 0.0 | zinc finger CCCH domain-containing protein 47 | ||||
Swissprot | Q8GW05 | 0.0 | C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47 | ||||
TrEMBL | A0A0E0Q3T6 | 0.0 | A0A0E0Q3T6_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI07G02240.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16637 | 11 | 12 |
Publications ? help Back to Top | |||
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