PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G02240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 656aa    MW: 68652.8 Da    PI: 5.5649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G02240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07324347327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +lC+ +++ G C+ G+ C+++Hg+
  ORUFI07G02240.1 324 IALCSKWRK-GRCHNGAACRYSHGE 347
                      589******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0053321347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5321352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-8322352IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5324347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.469326348IPR000571Zinc finger, CCCH-type
SMARTSM0035635460489IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.545460490IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MADPNGRRRL PTGDPDQANA SPSRRVSAVD GVTGGEGRPT YSHFPPGAYE PTDVAYGIRD  60
AANDERARAR ARARHDQGGG AHDHHHDRPR QDQRGEAHLH DLPGEKSEVP DVGPSDQQGK  120
EASDTDMAPL AALAKRSYDV NFPPLHEHRA APFPAPAPAS APAPAGTMGS SSAQVQGDGA  180
PDNHDHDPRH LPQQDQSGGA HPDDLHGEKT IGSGSDILDD SKRGMINAGP QHDRITTSNG  240
GSGSGSDKGK GVSYAGDKPA SSSSSSSSAG QQGSDTDKTP SAAAASSYAV NFPPLLPAPA  300
PVPAPAPAPA VAGAMGVANA HHKIALCSKW RKGRCHNGAA CRYSHGEEEQ RIVPEMRVGG  360
GGRPCPELAA AKGWCSSRDT IYVPANRDNP LLPIGQFPQD HVKSGSASAA VDMINSSAGD  420
DNARDFSSSP RLDVIAEAQG AAWGWDALWE DTGFAHCLHD PKTVLCWRYM YGGDDYCDLG  480
CDCFDAHSYN DLQSKIRTGV AAASRSYSVP HPDLDLDLSD VSQFAGVFSS QQQPPASDEW  540
NFAVGNMQQQ QQQRSMTPSA SSRATAATDA DGEDPPPPPP HPPSPSAEGS ASPPTTPGTP  600
TTGADEKNVG ELNDVDYPLL LPDAPAPAPA PAPAPPPSHT PIRHCHEPLR VFVVRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646504.10.0zinc finger CCCH domain-containing protein 47
SwissprotQ8GW050.0C3H47_ORYSJ; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A0E0Q3T60.0A0A0E0Q3T6_ORYRU; Uncharacterized protein
STRINGORUFI07G02240.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166371112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]