PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI07G02160.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 334aa MW: 35292.8 Da PI: 11.8979

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI07G02160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	61	4.6e-19	139	242	24	129
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaakskksqksaasalnlakesra 116 ls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++ + + ++ +++ + + + + + ++sa++ + +++ a+ ++ e+r ORUFI07G02160.1 139 LSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSL--DCS-FVLPNAAQLLTRRRRRPlSGRPSAEQARTRKATVAASPGKSGEKRR 229 89****************************************..444.4456666666665555532333333444444455545666668888 PP TCP 117 karararertrek 129 k r+r r +e ORUFI07G02160.1 230 KTRSRCAARRAEH 242 8888866665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	16.897	110	177	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-16	139	250	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSGHHVIISL PPSLPPLSLS LSSPSGQAGR RWGGHRDKEV GRPAGDAAAA TWEKGREAAA 60 GARGAKAASI KIDQTKPRRI SHELAQASAM EEVVVGKERK RPRCALVGVG VGGHSGARGG 120 RAEWRAQWRA RRTSTAKWLS VPTAIAFYDI QDRLGVDQPS KAIEWLIRAA AAAIDALPSL 180 DCSFVLPNAA QLLTRRRRRP LSGRPSAEQA RTRKATVAAS PGKSGEKRRK TRSRCAARRA 240 EHIAKLRARR EGWMPRREAS TSAASGGQSW IRKPSTPRSG GLCSGAGEGE GGGGGSTREI 300 EEDELKHGGE RSGATMGGEG RQGGGAERGG GGRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-11	139	178	16	55	Putative transcription factor PCF6
5zkt_B	1e-11	139	178	16	55	Putative transcription factor PCF6
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004314	0.0	AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBank	CP012615	0.0	CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0Q3S8	0.0	A0A0E0Q3S8_ORYRU; Uncharacterized protein
STRING	ORUFI07G02160.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP54256	2	2