PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G01770.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 358aa    MW: 38789.6 Da    PI: 7.0002
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G01770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox309.1e-102843192055
                      HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  ORUFI07G01770.1 284 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 319
                      4679*****************************885 PP
2ELK35.71.9e-12239260122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK qLl+KYsgyL+sL+qEFs
  ORUFI07G01770.1 239 ELKFQLLKKYSGYLSSLRQEFS 260
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.8E-2389133IPR005540KNOX1
PfamPF037904.1E-2291131IPR005540KNOX1
SMARTSM012565.4E-30136187IPR005541KNOX2
PfamPF037917.9E-24141185IPR005541KNOX2
PROSITE profilePS5121311.401239259IPR005539ELK domain
PfamPF037892.3E-9239260IPR005539ELK domain
SMARTSM011885.7E-7239260IPR005539ELK domain
PROSITE profilePS5007112.892259322IPR001356Homeobox domain
SuperFamilySSF466891.28E-19260333IPR009057Homeodomain-like
SMARTSM003894.4E-13261326IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.9E-28264323IPR009057Homeodomain-like
CDDcd000863.19E-12271323No hitNo description
PfamPF059201.0E-16279318IPR008422Homeobox KN domain
PROSITE patternPS000270297320IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDQSFGNLGG GGGAGGSGKA AASSFLQLPL STAAAATAYY GTPLALHQAA AAAGPSQYHG  60
HGHPHHGGGH HHSKHGGAGG GEISVAEAES IKAKIMAHPQ YSALLAAYLD CQKVGAPPEV  120
LERLTATAAK LDARPPGRHD ARDPELDQFM EAYCNMLAKY REELTRPIDE AMEFLKRVES  180
QLDTIAGGAH GGGGGGAGSA RLLLADGKSE CVGSSEDDMD PSGRENEPPE IDPRAEDKEL  240
KFQLLKKYSG YLSSLRQEFS KKKKKGKLPK EARQKLLHWW ELHYKWPYPS ETEKIALAES  300
TGLDQKQINN WFINQRKRHW KPSEDMPFVM MEGFHPQNAA ALYMDGPFMA DGMYRLGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0501810.0AF050181.1 Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646117.10.0homeobox protein knotted-1-like 12
SwissprotO650340.0KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804160.0KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A0E0Q3M70.0A0A0E0Q3M7_ORYRU; Uncharacterized protein
STRINGORUFI07G01770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-106KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]