PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G28510.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1171aa MW: 129567 Da PI: 6.7643

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G28510.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.6	1e-22	154	255	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++ ORUFI06G28510.2 154 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 243 99***************************954.4444.49********************************************..56 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++l+++++r+ ORUFI06G28510.2 244 EKQQLLLGIRRA 255 88889**997 PP
2	Auxin_resp	117.9	8.1e-39	280	363	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ ORUFI06G28510.2 280 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 363 79********************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.4E-43	143	283	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-41	146	269	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.74E-19	153	245	No hit	No description
SMART	SM01019	1.6E-22	154	256	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.801	154	256	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-20	154	255	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.6E-33	280	363	IPR010525	Auxin response factor
Pfam	PF02309	1.8E-9	1025	1112	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	26.938	1027	1111	IPR000270	PB1 domain
SuperFamily	SSF54277	4.61E-7	1039	1106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1171 aa Download sequence Send to blast
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV 60 SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV 120 YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF 180 PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF 240 VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP 300 TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR 360 NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA 420 MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL 480 GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD 540 ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ 600 QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ 660 LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKVP 720 SQNTPLPLPV QQEPQQKLLQ KQAMLADTSE AAVPPTTSVN VISTTGSPLM TTGATHSVLT 780 EEIPSCSTSP STANGNHLLQ PILGRNKHCS MINTEKVPQS AAPMSVPSSL EAVTATPRMM 840 KDSPKLNHNV KQSVVASKLA NAGTGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHQN 900 FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK 960 YENHISTEID NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA 1020 APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER QRIGWKLVYK 1080 DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA 1140 WRARCDQNSE AILKISMMKS KVEDVRYWNT A

Sequence ? help Back to Top

Protein Sequence Length: 1171 aa Download sequence Send to blast

MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV  60
SLPPAGSLVV YFPQGHSEQV AASMQKDVDA HVPSYPNLPS KLICLLHNVT LHADPETDEV  120
YAQMTLQPVT SYGKEALQLS ELALKQARPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF  180
PPLDFSMQPP AQELQARDLH DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF  240
VRDEKQQLLL GIRRANRQPT NISSSVLSSD SMHIGILAAA AHAAANNSPF TIFYNPRASP  300
TEFVIPFAKY QKAVYGNQIS LGMRFRMMFE TEELGTRRYM GTITGISDLD PVRWKNSQWR  360
NLQVGWDESA AGERRNRVSI WEIEPVAAPF FICPPPFFGA KRPRQLDDES SEMENLLKRA  420
MPWLGEEICI KDPQTQNTIM PGLSLVQWMN MNMQQSSSFA NTAMQSEYLR SLSNPNMQNL  480
GAADLSRQLC LQNQLLQQNN IQFNTPKLSQ QMQPVNELAK AGIPLNQLGV STKPQEQIHD  540
ASNLQRQQPS MNHMLPLSQA QTNLGQAQVL VQNQMQQQHA SSTQGQQPAT SQPLLLPQQQ  600
QQQQQQQQQQ QQQQQQQKLL QQQQQQLLLQ QQQQLSKMPA QLSSLANQQF QLTDQQLQLQ  660
LLQKLQQQQQ SLLSQPAVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLSQQQ MMPQQSTKVP  720
SQNTPLPLPV QQEPQQKLLQ KQAMLADTSE AAVPPTTSVN VISTTGSPLM TTGATHSVLT  780
EEIPSCSTSP STANGNHLLQ PILGRNKHCS MINTEKVPQS AAPMSVPSSL EAVTATPRMM  840
KDSPKLNHNV KQSVVASKLA NAGTGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHQN  900
FPMSNFNQPQ MFKDAPPDAE IHAANTSNNA LFGINGDGPL GFPIGLGTDD FLSNGIDAAK  960
YENHISTEID NSYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSTINDGG FLNRSSWPPA  1020
APLKRMRTFT KVYKRGAVGR SIDMSQFSGY DELKHALARM FSIEGQLEER QRIGWKLVYK  1080
DHEDDILLLG DDPWEEFVGC VKCIRILSPQ EVQQMSLEGC DLGNNIPPNQ ACSSSDGGNA  1140
WRARCDQNSE AILKISMMKS KVEDVRYWNT A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-171	42	384	46	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB071296	0.0	AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643493.1	0.0	auxin response factor 19
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	A0A0E0Q2A5	0.0	A0A0E0Q2A5_ORYRU; Auxin response factor
STRING	ORUFI06G28510.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]