PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G26900.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 354aa MW: 40357.2 Da PI: 9.1223 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.7e-07 | 14 | 37 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +++ G+C++ ++C+FaHg ORUFI06G26900.2 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37 9**********.*****.*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-12 | 8 | 44 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0023 | 13 | 38 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 13 | 39 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 14 | 37 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD 60 HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR YGARGRHRKK 120 LEGGKTNSSE SLNSSDNEDR KKDDRFNKAD DKHDNEAQLQ RIQLDMEALH EEKSSLEVIL 180 NGKINEASKL SSRIADLESQ LNDEKEACER SQARFERFAD LLASDTLKPC SKDQGSSAAK 240 EDPYNAYEMS PSDQRQNHET TRKRSVALST SEEGRNGKKR RESYDNRDPM SEKYRPEDAL 300 EPFQSSKGTE AKELLSVKKN LGDGDNNEKG NVVSSANVFT DRYEGGDDDD VLVD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 261 | 280 | RKRSVALSTSEEGRNGKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064816 | 0.0 | AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644053.2 | 0.0 | zinc finger CCCH domain-containing protein 13-like isoform X1 | ||||
Swissprot | Q6H7U2 | 6e-89 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A0D3GK02 | 0.0 | A0A0D3GK02_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0ADE2 | 0.0 | A0A0E0ADE2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0Q1R0 | 0.0 | A0A0E0Q1R0_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM06G26340.2 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI06G26900.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | OBART06G24960.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-06 | C3H family protein |
Publications ? help Back to Top | |||
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