PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G26900.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 348aa MW: 39696.5 Da PI: 8.7013

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G26900.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.7e-07	14	37	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +++ G+C++ ++C+FaHg ORUFI06G26900.1 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37 9********.*.*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.3E-12	8	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0023	13	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.324	13	39	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-5	14	37	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD 60 HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR HRKKLEGGKT 120 NSSESLNSSD NEDRKKDDRF NKADDKHDNE AQLQRIQLDM EALHEEKSSL EVILNGKINE 180 ASKLSSRIAD LESQLNDEKE ACERSQARFE RFADLLASDT LKPCSKDQGS SAAKEDPYNA 240 YEMSPSDQRQ NHETTRKRSV ALSTSEEGRN GKKRRESYDN RDPMSEKYRP EDALEPFQSS 300 KGTEAKELLS VKKNLGDGDN NEKGNVVSSA NVFTDRYEGG DDDDVLVD

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD  60
HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR HRKKLEGGKT  120
NSSESLNSSD NEDRKKDDRF NKADDKHDNE AQLQRIQLDM EALHEEKSSL EVILNGKINE  180
ASKLSSRIAD LESQLNDEKE ACERSQARFE RFADLLASDT LKPCSKDQGS SAAKEDPYNA  240
YEMSPSDQRQ NHETTRKRSV ALSTSEEGRN GKKRRESYDN RDPMSEKYRP EDALEPFQSS  300
KGTEAKELLS VKKNLGDGDN NEKGNVVSSA NVFTDRYEGG DDDDVLVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	274	RKRSVALSTSEEGRNGKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064816	0.0	AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644053.2	0.0	zinc finger CCCH domain-containing protein 13-like isoform X1
Swissprot	Q6H7U2	1e-89	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A0D3GK01	0.0	A0A0D3GK01_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0ADE1	0.0	A0A0E0ADE1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0Q1Q9	0.0	A0A0E0Q1Q9_ORYRU; Uncharacterized protein
STRING	ONIVA06G28080.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	1e-06	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]