PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G26560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 664aa MW: 72439.4 Da PI: 6.8665 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.1 | 2.3e-06 | 117 | 137 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ + G+C+ G++C++ H+ ORUFI06G26560.1 117 ECNMYKM-GFCPNGPNCRYKHV 137 6666666.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.957 | 58 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-5 | 58 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 59 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-5 | 59 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.596 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.065 | 112 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0031 | 114 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-4 | 118 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50882 | 57.421 | 259 | 394 | IPR007275 | YTH domain |
Pfam | PF04146 | 4.8E-44 | 259 | 393 | IPR007275 | YTH domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:1900363 | Biological Process | regulation of mRNA polyadenylation | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 664 aa Download sequence Send to blast |
MDDGDLSFDF EGGLDQPPAG GGGGPAPHSS DPGGVGGGGG GGGPGDGGGH GRGRGRGSYR 60 QTVCRHWLRG LCMKGEACGF LHQFDKARMP VCRFFRDFGE CREPDCAYKH SYDDVKECNM 120 YKMGFCPNGP NCRYKHVKLP GPPPPVEEVL QKILQIRSFN KFNQHRHNNY NQQGERPQHP 180 QGSGLPNQNS IDNTTTTTAQ PAVGQQAQTT NQQPPQQQQQ QQQQQQQQKP NTNDQVQSVP 240 NGSSNQATRI ATPLPQGPSR YFIVKSCNRE NLEISVQQGI WATQRSNEAK LNEAFESIEN 300 VILIFSINRT RNFQGCAKMT SRIGGYIGGG NWKSAHGTAH YGRNFSIQWL KLCELSFQKT 360 HHLRNPYNDN LPVKISRDCQ ELEPFIGEQL ASLLYLEPDS ELTAILIAAE AKKEEEKAKG 420 VSADEAADNQ DIVLFDDNEE EEEEESEEEE EGNGQESQGR GRGRGMMRPP QMPMLRGVGP 480 MMGGRGFPPN MIGDGFGFGG GFGMPDPFGV PRGFPPFGPR FPGDFARGGP MPGMVFPGRP 540 PQPGGMFPMG LEMMMGPGRG PLMGGLGMGG PGRPNRPVGM APFMPPPPPP NNRGTKREQR 600 RPGGERGDRY ETTSDQGSRG HDATGNSGAE GARSQSGDRY GRSALRDDDS ESDEEAAPRR 660 SRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zuu_A | 1e-104 | 244 | 422 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_B | 1e-104 | 244 | 422 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_C | 1e-104 | 244 | 422 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
5zuu_D | 1e-104 | 244 | 422 | 2 | 180 | 30-kDa cleavage and polyadenylation specificity factor 30 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003728 | 0.0 | AP003728.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0710B08. | |||
GenBank | AP004989 | 0.0 | AP004989.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1153E06. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644405.1 | 0.0 | zinc finger CCCH domain-containing protein 45 | ||||
Swissprot | Q0DA50 | 0.0 | C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45 | ||||
TrEMBL | A0A0E0Q1M1 | 0.0 | A0A0E0Q1M1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G26560.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5989 | 24 | 28 |