PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G25880.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 31482.8 Da    PI: 4.7968
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G25880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.61e-25959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krie+ ++rqvtfskRr+g lKKA+EL vLCda+v v++fs +gkl++++s
  ORUFI06G25880.1  9 KRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCS 59
                     79***********************************************96 PP
2K-box523.1e-1882158984
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                       ++++ e++  e+++L++ei++L+ ++R+  GedL+s s + eL qL+ qLe+sl+k+ ++K+el+ +q+e+++++ 
  ORUFI06G25880.1  82 ETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVStVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMV 158
                      4556678999***************************984689*******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.726161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.19E-37272No hitNo description
SuperFamilySSF554553.66E-28277IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-1784157IPR002487Transcription factor, K-box
PROSITE profilePS5129712.12187174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRGKIEMKR IEDATRRQVT FSKRRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP  60
PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE IDQLEASLRR QTGEDLSSVS  120
TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMVHY SLIVVAVVVF ADECIRPCMS  180
RTISCAAWGE LQLWSSLPVG EQQMSENWHS ENWQSPGSGE ASAMEALTML PPAAAATTAA  240
EAFNCFFPEE EKGVAASSTL LQLWPQPHDG DQPDLRLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-15159159MEF2 CHIMERA
6bz1_B5e-15159159MEF2 CHIMERA
6bz1_C5e-15159159MEF2 CHIMERA
6bz1_D5e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1740930.0AY174093.1 Oryza sativa (japonica cultivar-group) MADS30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882176.11e-107MADS-box transcription factor 30 isoform X6
RefseqXP_025882177.11e-108MADS-box transcription factor 30 isoform X7
SwissprotQ655V41e-109MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A0E0Q1D20.0A0A0E0Q1D2_ORYRU; Uncharacterized protein
STRINGORUFI06G25880.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-36MIKC_MADS family protein