PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G25680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 365aa    MW: 39577.8 Da    PI: 8.9881
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G25680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-3356110155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  ORUFI06G25680.1  56 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 110
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.87653113IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-3253111IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1655112IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-2456111IPR006447Myb domain, plants
PfamPF002492.2E-758108IPR001005SANT/Myb domain
PfamPF143792.7E-24148194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MFPSSSPSPS PSSSKKQQQL SGGVGVGGAA AAASSNDRPP LCVQGDSGLV LTTDPKPRLR  60
WTVELHDRFV DAVTQLGGPD KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQHKDFNDH  120
SVKDAMDMQR NAASSSGIMG RSMNDRSVHV NEALRMKMEV QRRFHEQLEV QKHLQMRVEA  180
QGKYMQTILE KAYQAISSSG DCATWHAGYK SLGSQAVLDI GSSMSFPSLQ DDLQLYGGSH  240
LDHLHQQHEQ MEIRPSIDTF LAFNYSSSTG KSPMVWPGAD DGGGEPAKIS GDHQLQMAAP  300
ATTTMMMEAI TMSGGDSMGS KGFEGQMSSK LDMRSPPPQQ TVLPVGSERM SSPIVGAKAR  360
NISYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1856112157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1856112157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1856112157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1856112157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195880.0AK119588.1 Oryza sativa Japonica Group cDNA clone:002-117-C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642102.10.0myb family transcription factor APL isoform X1
SwissprotQ9SAK52e-84APL_ARATH; Myb family transcription factor APL
TrEMBLA0A0E0Q1B10.0A0A0E0Q1B1_ORYRU; Uncharacterized protein
TrEMBLB9FQD70.0B9FQD7_ORYSJ; Uncharacterized protein
STRINGORUFI06G25680.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-83G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]