PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G24400.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 375aa MW: 40384.3 Da PI: 7.0022 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.5e-07 | 308 | 341 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + ORUFI06G24400.2 308 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 341 569*****************************87 PP | |||||||
2 | ELK | 29 | 2.3e-10 | 262 | 283 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ ORUFI06G24400.2 262 ELKHELKQGYREKLVDIREEIL 283 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 93 | 137 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.9E-16 | 96 | 133 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-25 | 151 | 206 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.5E-17 | 159 | 205 | IPR005541 | KNOX2 |
Pfam | PF03789 | 3.6E-6 | 262 | 283 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0014 | 262 | 283 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.196 | 262 | 282 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 282 | 345 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-15 | 284 | 349 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-10 | 284 | 349 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.52E-11 | 285 | 346 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 289 | 346 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 302 | 341 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSVTQVRGAS RLTPSLPPNC YNNKSSSSSS SSSSSSTSRA AAAAAVRVMA FHYQDHALAM 60 DAAAAAAETG GHHHPGFVGA GGVVGGGGGG GWEREKAAIA AHPLYERLLE AHVACLRVAT 120 PVDQLPRIDA QIAARPPPLA AATAAAAAAA AGGAPSGGEE LDLFMTHYVL LLCSFKEQLQ 180 QHVRVHAMEA VMACWELEQT LQSLTGASPR EGSGATMSDD EDNQVDSESN MFDGNDGSDG 240 MGFGPLMLTE GERSLVERVR QELKHELKQG YREKLVDIRE EILRKRRAGK LPGDTASTLK 300 AWWQAHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPASS SSDKSKRKSW 360 DVLAVSLQLG TTMYL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB061818 | 0.0 | AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644389.1 | 0.0 | homeobox protein knotted-1-like 11 isoform X1 | ||||
Refseq | XP_015644390.1 | 0.0 | homeobox protein knotted-1-like 11 isoform X2 | ||||
Swissprot | Q94LW4 | 0.0 | KNOSB_ORYSJ; Homeobox protein knotted-1-like 11 | ||||
TrEMBL | A0A0E0Q0T7 | 0.0 | A0A0E0Q0T7_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI06G24400.2 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-138 | KNOTTED1-like homeobox gene 3 |