PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G23810.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1950aa    MW: 213388 Da    PI: 7.4981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G23810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-0618211842627
                       -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                       C+ f +tG+C+ G+rCk +H++
  ORUFI06G23810.1 1821 CPVFEATGECPQGSRCKLHHPK 1842
                       *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.03717111740IPR000571Zinc finger, CCCH-type
SMARTSM003560.917111739IPR000571Zinc finger, CCCH-type
SMARTSM003561417401764IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.85917441765IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.23517661792IPR000571Zinc finger, CCCH-type
SMARTSM003560.009417661791IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7617931820IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-517931819IPR000571Zinc finger, CCCH-type
SMARTSM003561.118201842IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.43718211843IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1950 aa     Download sequence    Send to blast
MDPPPPFDHP LHRRHYSDHH HFPPGGSGGS GGAASAAARL RVPLSPPLQQ LLPWEEAEEE  60
RRRYGGATQQ LRLSPSGPRK RQRCAVHDAD VESTSSSGPP PRRQRQQPHP DYALDDSFVD  120
RNNAHPGYMV HEGFSIHSDS KVSRKIQMPT QMALPGSPHG TSAGYARRAP QKVAPSRVSV  180
WHRIEENPAM YEPSSPPPHM PKEVHVSPCK SNNVAPASKE LASVISVDCR GKSADGNDGD  240
SNTGTKKNPV KKNEKVLASV LVKPPMEPKE KEVAAKKMLK KPDKVQKNAV HSNIRSLVST  300
PCPGAGAKKV KKIVIKKIVR KINGKGNQNS TPVVSEKRDG IDANACEKEE GEITTSSFEK  360
DVISAHDPIA VSDTAGFGNA VNDQKQKNTN FTNPSGRNAA SANGYMEIPD PPNGSGSAHP  420
GKEEVLSPKN PVDNSNASLV VEPIEVLEKS GTEHPRKEHD MSSIGSGVND AFADANNHTQ  480
KEVGEMNVAV AINSVRVSDA REVPRCDDSS MEESKVPKDV DANNAVCMDG VASNCDTTEV  540
CGNEDARREC GKKLIGINDE KAFLLNNSAR SSSTSDTCMT AVEGAQKKEG IILTGSSEKS  600
IGFLGDSVGT HRTTEFGASK DAPNEGDDMP SHPSEKDFMS LNSCGGLNYT EVSEKEDIQE  660
KEDRVPMESI VACTSSGNED IQVNEGRKPM ELSEANAFSG SGDSQGKECR IPMGSSETNT  720
SSVNHVNASN EKDFSLSEDT QKKESHRPIE SCENTTFEIM HHEEAPSTEE VITGVSLGRK  780
VAEGPTRSNE RCSGARGNSA TTLKFGLACA TEDNQMEDLL NNRTALNETD DPLDAEDSPV  840
FVPPSSRNVE STYASPLYDP MEDSTSDGIM NIGLGRNTTS KAAELLDLHR DHISSENDSL  900
IHSRGTSSVS GNREQSVPTA LTLGSNIYFS SAETDDRPEE RHELVVEGQQ GLTVETTSKL  960
DSPGKIEVLN GAGFISIGIQ NWLSLPPSIN SMEMSGQFLN NGFTVSKGRL GLDQSMDDAT  1020
SVSQDHDIAQ DMDQRGSEDA FFSQDHSIRL CGSNLPHSHL LAPKESSMNG EDQSGIVLTG  1080
LHPSSSVNVL GHYGYQTDDI PVDNLNKLPS ALESSDAMDA DQVSSQVCVN PDHTNDSNTE  1140
NAGVESNAKQ DLLSSWIEAI VSEAKKEHPP CKSTPLTVGL PDKLLEPKDS DRKTLLETVV  1200
PSAVKSPQIN FASSTLQKVA PKQVTLPSSS REPTRANQNA RHRTWHRGNI ASSSSSLHAS  1260
QPLGLPPKLP PKKNDKAQNS YIRKGNALIR NPSNGNHPHS STGHDTENKL NKPVVRRSMN  1320
FVRKADTKDL ANSNISVERP KTPPLPLHTK SSCPTTLLEP LSQTLQKQHG HEAEKEDLTG  1380
QPKSGVDNSS IKSAQKSEPS DPSKVVYVRP KSNQLVAAQR QHPIDLVNSP TDKILSLQAP  1440
IASDLYLKKR KNQIVLSSCS PSDGLSTKET LPAENSNSEE KKDLMIACSI SGIPGVKDRP  1500
QKALQTTNNV GRFSHVWTLN GQQPQRKGFM GSSHMNAFPR ILPWKRKIFC KNFRSSHMSN  1560
VSSIRIVRKL LQTRKRDMIY TVSTDGFSLR KSGVLSVGGS SLKWSRSLEK RSQKVNKEAT  1620
LALAEVERRK REKRKRQSLH DKGDHQFESV TGNQLRNSRQ SSSDLRKPST CNEYVRVSKG  1680
NQLVRNPKNV IRMLASDKVR WSLHTVRSRL AKKQQYCQFF TRFGECKKPR GKCPYIHDRA  1740
KVTICTKFLK GLCSNTSCKL THKVLPERMP DCSYFLRGLC TNIACPYRHV KVNLNAPVCE  1800
DFLKGYCAYG DECHKKHSYV CPVFEATGEC PQGSRCKLHH PKSKVKSKSR RPDFLQNSSW  1860
GRYFDASIDH QDETRKVSLD EDEREKPQRV FSDGDLGFIS LDDDADEDVT ALDASDDIPL  1920
MELDSGDLSA QTDNLDALIK PLRIMRTARV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C4e-161717184241168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C4e-161717184241168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116271632RRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035730.0AP003573.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0523F01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643043.10.0uncharacterized protein LOC4341610 isoform X2
TrEMBLA0A0E0Q0K90.0A0A0E0Q0K9_ORYRU; Uncharacterized protein
STRINGORUFI06G23810.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67031010