PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ORUFI06G23690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 392aa MW: 40886.2 Da PI: 9.4028 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.9 | 6e-14 | 103 | 155 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G r ++ +g+++AeIr + ++ r++lg+fgtaeeAa a++ a+ ++g ORUFI06G23690.1 103 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFGTAEEAAWAYDTAATVIHG 155 8********.**********5...445588*********************977765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-24 | 102 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-17 | 103 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-8 | 103 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.27E-23 | 103 | 163 | No hit | No description |
SMART | SM00380 | 1.8E-24 | 103 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.495 | 103 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAVEAEGF 60 AAANGEGWVA PAVEGEGEGF VGAPVVEGEE GLTAELLVAA ERKYRGARKR PWGKYAAEIR 120 IRNTMGVKER VWLGTFGTAE EAAWAYDTAA TVIHGDKATT NFPRAPLRPA TTPVMRSMLV 180 FFGIAHLVRS LVPRARGPRG RGGGARGRGR SRRRRAAAAA APSAPASEAP PPPPPSSALV 240 PEPELQVQGG RGERGRGRGR GRGGGRGGRR GRGRTPARVV AEDSPMLQAT TPAAAPAPAP 300 ALAPAPANQA IFQPMIIPPG GVVVAPDDFL LSAISDDEPV LPHKKPKLLG VYTPPDSPDQ 360 FVMEFFADLG DGDDILSSSF WQDPAGDGED TQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-17 | 98 | 163 | 8 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 266 | RGRGRGGGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005386 | 0.0 | AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0Q0J7 | 0.0 | A0A0E0Q0J7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q67V18 | 0.0 | Q67V18_ORYSJ; Os06g0636000 protein | ||||
STRING | ORUFI06G23690.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18236 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 9e-13 | ERF family protein |