PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G23640.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ERF

Protein Properties

Length: 985aa MW: 97074.5 Da PI: 5.5334

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G23640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.8	1.8e-10	121	172	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge ORUFI06G23640.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69******.8*****95....258**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.50E-18	121	178	No hit	No description
Pfam	PF00847	1.1E-4	121	172	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.5E-21	122	179	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-14	122	179	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.701	122	179	IPR001471	AP2/ERF domain
SMART	SM00380	3.4E-18	122	187	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPAPPSSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG AGAGVGGGRG LGRGGGGGRG 360 RGGKRAPTTA VTVVAPPPPV PTPAAGAAAP TLAPASAAAH APALSVEPDA LVSPASIAPA 420 YAAPAPAPAP AALEALAPPP PAAPASLSAS GGERGCVAIA NAAVAGRGRG RGSGAKRAPT 480 AVTVGAPPPQ ARTPAAAPAK AFVSAPAPAP SSVISPVLAA SASAAAAFAP APAPAAAEVI 540 PPPPLPAAAS TAAAPAAERK RKLLTASSLS SSGGERGRGR ARGRGRVADA AIAGGSRGRG 600 RGCGLTPAVV TVGAPPPPSA APAPAPASAP SLEPNDIIAP VVSSTLAPGA SAAAAAAPAV 660 APPAAALEAI LIPMPPPAAA AAAAAPVPKK RKVRTASTLS GSGGPGRGRG RVAEATFVGR 720 GRGVWSVRGR GRGRIPTEVT VGTPSPSAPT PAPASATAPL IQSNVVISPV PPTLAASGVA 780 AWPPVPAIPE LTTAAAAPLP EKPVLTAHDV VMATLFPNGV FSYTAGSSHA PPPPVASGSF 840 FQEVIPPGGV PTNYAIHEAP DFDPNVFFAD VPDGEQDELV LLSLTSTLLD IDNSLTLVAD 900 DAASSAQAAV DVASSSAQAA IDVPSSSVLA VVDIPSSSAQ AAIDVPASLA QAATDVASSS 960 TQGAAGNERP IMFDFDLNEP ASNFE

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS  60
GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE  120
TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD  180
PAQTPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS  240
SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP  300
VQVPAPPSSD VALVPVPVQV PAPTSSGSDE AAFVGGRGRG AGAGVGGGRG LGRGGGGGRG  360
RGGKRAPTTA VTVVAPPPPV PTPAAGAAAP TLAPASAAAH APALSVEPDA LVSPASIAPA  420
YAAPAPAPAP AALEALAPPP PAAPASLSAS GGERGCVAIA NAAVAGRGRG RGSGAKRAPT  480
AVTVGAPPPQ ARTPAAAPAK AFVSAPAPAP SSVISPVLAA SASAAAAFAP APAPAAAEVI  540
PPPPLPAAAS TAAAPAAERK RKLLTASSLS SSGGERGRGR ARGRGRVADA AIAGGSRGRG  600
RGCGLTPAVV TVGAPPPPSA APAPAPASAP SLEPNDIIAP VVSSTLAPGA SAAAAAAPAV  660
APPAAALEAI LIPMPPPAAA AAAAAPVPKK RKVRTASTLS GSGGPGRGRG RVAEATFVGR  720
GRGVWSVRGR GRGRIPTEVT VGTPSPSAPT PAPASATAPL IQSNVVISPV PPTLAASGVA  780
AWPPVPAIPE LTTAAAAPLP EKPVLTAHDV VMATLFPNGV FSYTAGSSHA PPPPVASGSF  840
FQEVIPPGGV PTNYAIHEAP DFDPNVFFAD VPDGEQDELV LLSLTSTLLD IDNSLTLVAD  900
DAASSAQAAV DVASSSAQAA IDVPSSSVLA VVDIPSSSAQ AAIDVPASLA QAATDVASSS  960
TQGAAGNERP IMFDFDLNEP ASNFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	575	584	RGRGRARGRG
2	575	585	RGRGRARGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005386	0.0	AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881953.1	0.0	calphotin
TrEMBL	A0A0E0Q0J2	0.0	A0A0E0Q0J2_ORYRU; Uncharacterized protein
STRING	ORUFI06G23640.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13787	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28360.1	7e-12	ERF domain protein 12