PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G22620.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 356aa    MW: 36924.9 Da    PI: 9.8838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G22620.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06161186227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C+ +     Ck G++C+FaHg+
  ORUFI06G22620.3 161 KTRMCNKYNTAEGCKWGSKCHFAHGE 186
                      89**********************96 PP
2zf-CCCH36.39.7e-12321346127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +f + G C +GdrC+FaHg+
  ORUFI06G22620.3 321 FKTKLCENFNK-GSCTFGDRCHFAHGE 346
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035610095120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4105119IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.629108121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-14156191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-8159190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727159187IPR000571Zinc finger, CCCH-type
SMARTSM003560.97159186IPR000571Zinc finger, CCCH-type
SMARTSM003221.5E-10226296IPR004087K Homology domain
PROSITE profilePS5008414.802227291IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.3E-15227295IPR004088K Homology domain, type 1
PfamPF000137.7E-11229292IPR004088K Homology domain, type 1
CDDcd001055.02E-13229291No hitNo description
SuperFamilySSF547914.97E-15229321IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.1E-17318353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131320347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-9320351IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7320346IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9321346IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGKAGSSTNL EAVPTAPRTV PTRFNLTHHH SPSGSLVASR LVSCSARLHP PREREREGGS  60
KPYLGFCPPT ALAVDAMEAG GGKRAAPEGT NGAAKRAREI VVEGTSGCPF GSSCHFLHNF  120
PGGYQAAAKM TSHGGTAVAA PPGRMPLGPG APNGPPTSSV KTRMCNKYNT AEGCKWGSKC  180
HFAHGERELG KPMLLDNSMP HPMGSMPFEA PPMPGPDIVP PSTFGASATA KISVDASLAG  240
GIIGKGGTNT KHISRMTGAK LAIRDNESNP NLKNIELEGT FDQIKHASAM VTELIVRISG  300
NAPPAKNPGR GSHAGGPGSN FKTKLCENFN KGSCTFGDRC HFAHGESELR KPPAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641069.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A0E0Q0710.0A0A0E0Q071_ORYRU; Uncharacterized protein
STRINGORUFI06G22620.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-49C3H family protein